Gene detail

Detail information of GWHGAAEX008316/evm.TU.scaffold_214.22

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4282	1.00E-122	Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
nr	gi\|695005335\|ref\|XP_009389115.1\|	6.87E-166	PREDICTED: trihelix transcription factor GTL1-like isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q39117\|TGT2_ARATH	3.00E-123	Trihelix transcription factor GT-2
trEMBL	tr\|M0RP32\|M0RP32_MUSAM	6.00E-173	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr11P03520_001}
TAIR	AT1G76890	1.00E-122	Duplicated homeodomain-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000217	691876	699126	+

Transcript Sequence
>GWHTAAEX008316 TACTCATTCCAGTATTATTTTATGAATCATGCCATGCGGTTAATCCGAAACATTATTTTTTTTCTCCTCTGTTTTTAAATAAAAGTCTATAAGAAGGCAAATTCTTTTTTATATCGAAGAAAAGATGGGAAAGCCATTGTTTTTACCCATGATTGTAACAGCAGAGGGAGGAGGGTCGTAGTTGGATGCTCCTTCCTCCGCAGCTTCTCCTTCCCTCGTCGCTCTAATATTCCTCAGCTTCTTAGGCCTCCATTAATAATTTTCACCGCTGAGGGGGAAAAGGAAGATTCCTTGGGACGCATGCAGCAGCAGCAGGGTGGGTCCCAGTATGGGTTGCCTCCGCTGGAAATGGGGCCCGGGTACTCGCCGGCGCCGCAGATGATGGGAATTCATCAGGCGGCGGCGGCGAAGGCGGAGGCGGCATCGCCGATCAGCAGCCGGCCGGGACCGCCGGGAGAGGCGATTTTCGACGAATTGGGGGGACCAGCGAGGATCTTCGCCGAAGACGAGAGCGCGATGATCGCCGGCGCCGGAGAAGACGGGGAGAGAGGCGGAGGGGGAGGCGGAAACCGGTGGCCCAGGCAGGAGACGCTCGCCCTTCTCAAGATCCGCTCCGACATGGATTCCGCCTTCCGCGATGCCACCTTGAAGGGCCCTCTCTGGGAGGATGTATCCAGGAAGCTGGGAGAGCTGGGCTACTGCAGGAGCGCAAAGAAATGCAAGGAGAAGTTCGAGAACGTGCACAAATACTACAAGCGCACCAAGGAGGGCCGCGCGGGCCGCCAGGACGGCAAGAGCTACCGCTTCTTCACCCAACTTGAAGCGCTTCAGGGCGCCGCGGCGGCTGGCCTCCCCGCCGCCGCCGCCGCACCCTCCCTTTCCTCCTCCCCGAACACGAGCTCCCTCCCCGTACCTACCCCCAAGGCCTCCAACGCGTTTTCGGCCTCCTCTTCGGAGTCGTCGGACGGCGAAGACACGGATGACGCCGGGCTCCAGCAGGCGGATGGGGGACGTAAGAGGAAGCGGCAGGGGGAGAAGGAAGCGGCGGCGCTCTTCAAGGGCCTAATGAAGCAGCTGATGGAGCGGCAGGAGGCGATGCAGCGAAGGTTCCTGGACGCCATCGAGAAGCGGGAGCAGGACAGGATGGCCAGGGAGGAGGCGTGGAAACGGCAGGAGATGGCCCGCCTCAACCGCGAGTACGAGCTCATGGCGCAGGAGCGTACCATGGCCGCCACCCGCGACGCCGCCGTCATCTCCTTCCTCCAAAAATTCACCGGCCCCACCTCTCCTCCCGCCATCCCCGCCGCCCCGCCGCCCGACCAATCTCCGCCGCAGCCGCAGCAGCCGGAGGCCGGCCAAGAGATTGTGGTCCGCCATGAGGCTGCGGAGCCCGTCTCGGCCGTCGCGTGGCCCACGTCCAGGTGGCCGAAAGCGGAGGTCCTGGCGCTGATCAAGCTGCGCAGTGGGCTGGACGGGAGGTACATGGAGGCTGGGCCGAAGGGCCCGCTCTGGGAGGAGATTTCTATGGGGATGAAGCGCTTGGGGTACAACAGGAGCACCAAGAGGTGCAAGGAGAAATGGGAGAACATCAACAAGTACTTCAAGAAAGTAAAGGAGGGAAACAAGAAGCGTCCAGAGGATGCCAAGACTTGCCCTTACTTCCACGAGCTCGACGCCCTCTATCGACGTAAGCAGCTGCAGCAGCAGCAGCAGCAAGACCCCCTACCAATTTCAATTGCAAATGGCATTCCTCAGCCATTCTTTGGAGCCAATGGGAAGAAGCCCGAAGATATCGTCAAGGATCTGATGGAACACGGGAATCAAGAGGATGAGGATGATGATATCCATGATGATGAGGAGGAGGAGGAGGATGAGGATTACGATGATGACGACGACGACGAGAACGGAAAGTTGAGGTACGAGATTCAGTTCCAGAGGCAGCCGCCGAGCGTGGGAGGAGGCGGAAGTGCGGCGTCTGGAGCTTCGCAGCCTCCGGTGCCGCCATCCTCCAATGCCGGATCCTTCCTCGCTATGGTTCAGTGATACCTTTGTTATTGCATTCTTTTGCCTGAGTAGGCAATCTTTTCCAATGTTGATTTGTTGTGGGAATAAGGATGTCCTTCATGTCCAGTTAAGTGGATATACAGCAAGCCCAAGGGGGCGGTGCTGTAACAGAGTGCATAAATAAGCTTAGCAAAGAGCTGCAGCTGATGAGTTGAAAAGGTTAATTGGAGAACTGAGGAAGCCATTGTAAATTATTAGGGGAGTTCAGTCAGCTAAAAGGAGAAACAGGGATGGGATTTTTTTTATATATTTTTTTTTTCATTAATGTAGAAACTTGTCAAACGTACTTATGTGTAACTAGAATATAAAGCTTGCATATGAGTCTTTTACTCAATTTCCTCCATCAAGCACAAGAGAATCCTTAGGGAAAAGGGGAGGCAAGCAGGTGGGGCGGTCTTGTATTTGTTACTCTATATTGAAGCTCTTTAAATGTTGTTATAAGTTTATGGTGAGTTTAGATTTGGACAGATCATACATTACTATTCGGAGTATAATACCAGCGGCCATTCTATTGGAAATTATGCTTATTGATGTAGATGGAGGACTGAGGAAGATGCAGAGCTGTGGCACTTGGATGCCTTTTGTTGTGTTGGAATGCATATTTTTGTATTGCCTTTCTAAATCAAAGGAGACTTGTAGTGAAATATCAAAGCTAAGTTTTAGAACAAACCTAATATGTGGATTTATTTCGTCAATTACCCTCCCCCAATCCCATCATCTCTCCAATCTTGCCATCATTTTCGTCAAGTAACCGCTTTCATCCTCTCCCTATCCTCCTACGGATATGTTTTGTGGTGACTTGAGTGCAGCCCAAATGGTGCGAGGAGTTTGGATAAACTTGACTACAAATTGGAGTGTGTCAATGCGAGCAAGAACCAAAGTGTTGAAGCTTCAAGTGCAGTTGAATGCCCTTGGAGTGGATCATAGGCCAGTTGCGGAGCTTCGAGTGGTTTCAAGTTAGTCACTGATCAACCGAGTATGAGATGGATGTGAGTGAGCTGAATATTGCTTAATGAACTGAACTGGGCAGAGAAGCCAGTGTTTCGGCACTAGTACAATGTTCGTCAACTGAGACGAAGGAGAGAGACAAGGCTTGGGCGTACCCAAACGCTCATTTCAGCTAGTCGGAAAATTGAAGCTTTGGGAATTAGTCAATTTGAAGTTTCTGGCATACTTAGTCTGGGTATCTCAGTCCATTTGAAGTGCAATTCACAATCTATTTTATGTTACTTTACTCTCTGTTTATTTAAACCAACCTTAAAAATTACGACCAAAGACATTAATTTTCAGCCTA

Network for GWHGAAEX008316

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13837.5	Myb_DNA-bind_4	90	176	4.30E-20
PF13837.5	Myb_DNA-bind_4	373	460	2.30E-22

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	Trihelix

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	14.570
SRP064423	SRR2545915	Juvenile tuber	24.220
SRP108465	SRR5643513	five period of Gastrodia elata	82.620
	SRR5643514	five period of Gastrodia elata	65.230
	SRR5643515	five period of Gastrodia elata	66.920
	SRR5643524	five period of Gastrodia elata	55.480
	SRR5643525	five period of Gastrodia elata	94.820
	SRR5643528	five period of Gastrodia elata	57.370
	SRR5643658	five period of Gastrodia elata	97.420
	SRR5643659	five period of Gastrodia elata	102.300
	SRR5643660	five period of Gastrodia elata	108.280
	SRR5643661	five period of Gastrodia elata	105.350
	SRR5643662	five period of Gastrodia elata	93.050
	SRR5643663	five period of Gastrodia elata	81.180
	SRR5643664	five period of Gastrodia elata	118.740
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	96.390
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	58.030
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	95.170
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	84.990
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	59.420
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	48.350
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	77.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	73.510
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	90.660
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	78.110
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	92.750
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	92.750
SRP279888	Gastro	Gastrodia elata tuber	64.54
	Juven	Juvenile tuber	79.48
	Mother_Gastro	Mother tuber of Gastrodia elata	25.07
	Mother_Juven	Mother tuber of Juvenile	23.63