Detail information of GWHGAAEX008317/evm.TU.scaffold_214.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|428207739|ref|YP_007092092.1|1.00E-6450S ribosomal protein L11 [Chroococcidiopsis thermalis PCC 7203]
KOGKOG32577.00E-92Mitochondrial/chloroplast ribosomal protein L11
nrgi|743888223|ref|XP_010910568.1|2.58E-95PREDICTED: 50S ribosomal protein L11, chloroplastic-like [Elaeis guineensis]
Swissprottr|Q9MAP3|RK11_ARATH2.00E-9250S ribosomal protein L11, chloroplastic (Precursor)
trEMBLtr|M5WVE6|M5WVE6_PRUPE9.00E-92Uncharacterized protein {ECO:0000313|EMBL:EMJ10760.1}
TAIRAT1G329907.00E-92plastid ribosomal protein l11

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000217700851734074-
Transcript Sequence

Network for GWHGAAEX008317

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03946.13Ribosomal_L11_N741312.10E-27
PF00298.18Ribosomal_L111362041.20E-23
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02867RP-L11, MRPL11, rplK Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412Biological Processtranslation
GO:0003735Molecular Functionstructural constituent of ribosome
GO:0005840Cellular Componentribosome

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms30.030
SRR2545915Juvenile tuber18.870
SRP108465SRR5643513five period of Gastrodia elata20.820
SRR5643514five period of Gastrodia elata20.740
SRR5643515five period of Gastrodia elata14.310
SRR5643524five period of Gastrodia elata20.700
SRR5643525five period of Gastrodia elata13.310
SRR5643528five period of Gastrodia elata15.450
SRR5643658five period of Gastrodia elata15.430
SRR5643659five period of Gastrodia elata7.680
SRR5643660five period of Gastrodia elata5.280
SRR5643661five period of Gastrodia elata7.870
SRR5643662five period of Gastrodia elata6.940
SRR5643663five period of Gastrodia elata5.190
SRR5643664five period of Gastrodia elata9.510
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_120.560
SRR6049655Rhizomagastrodiae_C368-T10_good_124.740
SRR6049656Rhizomagastrodiae_C368-T07_good_122.540
SRR6049657Rhizomagastrodiae_C368-T07_good_122.760
SRR6049658Rhizomagastrodiae_C368-T04_good_116.640
SRR6049659Rhizomagastrodiae_C368-T04_good_114.950
SRR6049660Rhizomagastrodiae_C368-T01_good_119.870
SRR6049661Rhizomagastrodiae_C368-T04_good_124.070
SRR6049662Rhizomagastrodiae_C368-T01_good_131.330
SRR6049663Rhizomagastrodiae_C368-T01_good_125.840
SRR6049664Rhizomagastrodiae_C368-T10_good_129.030
SRR6049665Rhizomagastrodiae_C368-T10_good_129.030
SRP279888GastroGastrodia elata tuber 9.96
JuvenJuvenile tuber19.68
Mother_GastroMother tuber of Gastrodia elata 6.40
Mother_JuvenMother tuber of Juvenile 10.39