Gene detail

Detail information of GWHGAAEX008318/evm.TU.scaffold_214.27

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|158316034\|ref\|YP_001508542.1\|	3.00E-08	WD-40 repeat-containing protein [Frankia sp. EAN1pec]
KOG	KOG0290	1.00E-166	Conserved WD40 repeat-containing protein AN11
nr	gi\|743828962\|ref\|XP_010934016.1\|	0	PREDICTED: protein TRANSPARENT TESTA GLABRA 1-like [Elaeis guineensis]
Swissprot	tr\|Q9XGN1\|TTG1_ARATH	3.00E-167	Protein TRANSPARENT TESTA GLABRA 1
trEMBL	tr\|C0M0P1\|C0M0P1_TOBAC	3.00E-178	Transparent testa glabra 2 {ECO:0000313\|EMBL:ACN87316.1}
TAIR	AT5G24520	1.00E-166	Transducin/WD40 repeat-like superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000217	775863	777447	+

Transcript Sequence
>GWHTAAEX008318 CTTAGAATTTAGTCAGTGAAGCGGTCTCGCGCGTGGGTTTGACTGTTCTTCCGGTGTTCGGAATCGGCATCCATTAAAGCCCTTGAGTTTTTTTGACAAGAACGGTGCCCTAGTGTGGTTGGGTGAGGAAGAAAGAGATTCAAGTCGGCGGCGTCGGCGAATGGAGAACCTCGCGGCACATGGTTCACCCCTGAACCCTAAATCCAAGCACCAGCACACCTACACCTTCGATTCCTCACACCCGATCTACGCCATGGCCTTTAGCACCTCCTCGGCCTCGCCTCGCCTCGCCCTTGGCAGCTTCATAGAGGAGCTCAACAACCGCGTTGACATCGTCTCTTTCGATGAAGAGACACTCGCCTTTCGATCCGACCCCAAGCTCTTCTTCGAACACCAGTATCCTCCCACCAAGCTCATGTTCCACCCCAAGCCTCTCCCAGGCCAATCCCATTCCTTCCTCGCCTCTTCCGGCGAATTTCTCCGCTTATGGCGCATCAAAGAGTCCGCCATCGAGCTCCGCTCCGTCTTCAACAACAGCAAAGCCGCGGAGTTCTGCGCACCCCTCACCTCTTTCGATTGGAACCAGGTGGAACCCCGCCGCATCGGCACTTCCAGCATCGACACCACCTGCACTGTTTGGGATATCGAGCGCGGCATCGCCGAGACGCAATTGATCGCCCACGACAAGGAGGTCTACGACATCGCCTGGGGTGGTGCTGCCGCCTTCGCCTCCGTCTCCGCCGATGGATCTGTCAGGATCTTTGATCTTAGGGATAAAGAACACTCTGCTATAGTCTACGAGAGTCCCAGGCCGGATACTCCCTTACTTCGCCTCGCCTGGAACATGATGGATCTCAGATACATAGCCACCATCCTTATGGACGGTAACCAGGTGGTGATCCTCGATATTCGCTCTCCAGCTGTGCCTGTTGCCGTGCTGCAGAGGCACCGGGCCAGCGTCAATGCTGTTGCCTGGGCGCCGCATTCCTCCCGGCATCTCTGTTCTGCTGGGGATGATGGACAGGCTCTCATTTGGGAGATGCCGACTGCTGTACCGCCCGAAGGGGTCGATCCTGTGCTCGCTTACCAGGCAGGCGCGGAGATAAACCAGATGCAATGGACCGCAGCTCAGCGGGATTGGATTGGGGTTGCTTTCTCAAACAAGGTGCAGTTGCTCAGGGTTTGAGATGAAGGTATGAATCTGCTTTCCTTCATTCTGACTTGTATTTGTACCATAGTTTCACCCTTTCCATGTTTGTTTACCGTTTTTTTGTTCTGTTTGAGACATAGAATGCTGTTTCGTTGAGGCAGGTAATCTAGTTGTACATGTCTGGCCGCTGTTTTGTTTCTAGTTAGTTTATTGGTTTGAAGGAATAAAATTGGAGTGTGAAGGGGAGCAGAAGAGCCAAGTTTCTTATTTTGGTGTATAAGATACTGTTTTGGGCTGTTTGACTTGATGTCAAATACTCAGAGTAAATCGTGTAATGTAAATAAAAACAAGTGTAATTCAAATTTGAATGTTTGAAGCTTTTGCATTGTAATTAAAATGTGTTATTTGTTTGAATGAAAAGTAAAATAACTATTT

Network for GWHGAAEX008318

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.31	WD40	171	202	0.05
PF00400.31	WD40	256	292	0.0055

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	46.770
SRP064423	SRR2545915	Juvenile tuber	40.220
SRP108465	SRR5643513	five period of Gastrodia elata	64.750
	SRR5643514	five period of Gastrodia elata	52.200
	SRR5643515	five period of Gastrodia elata	63.230
	SRR5643524	five period of Gastrodia elata	53.490
	SRR5643525	five period of Gastrodia elata	80.250
	SRR5643528	five period of Gastrodia elata	88.570
	SRR5643658	five period of Gastrodia elata	60.120
	SRR5643659	five period of Gastrodia elata	65.280
	SRR5643660	five period of Gastrodia elata	72.480
	SRR5643661	five period of Gastrodia elata	77.690
	SRR5643662	five period of Gastrodia elata	73.470
	SRR5643663	five period of Gastrodia elata	64.730
	SRR5643664	five period of Gastrodia elata	85.010
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	76.400
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	111.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	74.280
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	75.870
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	61.920
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	64.480
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	65.000
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	70.740
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	67.120
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	60.750
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	75.670
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	75.670
SRP279888	Gastro	Gastrodia elata tuber	69.53
	Juven	Juvenile tuber	81.67
	Mother_Gastro	Mother tuber of Gastrodia elata	93.78
	Mother_Juven	Mother tuber of Juvenile	88.41