Detail information of GWHGAAEX008320/evm.TU.scaffold_214.30


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG08009.00E-12FOG: Predicted E3 ubiquitin ligase
nrgi|698482147|ref|XP_009788014.1|5.46E-15PREDICTED: E3 ubiquitin-protein ligase RHA1B-like [Nicotiana sylvestris]
Swissprottr|Q7X843|ATL48_ARATH4.00E-12RING-H2 finger protein ATL48
trEMBLtr|C5YH08|C5YH08_SORBI3.00E-15Putative uncharacterized protein Sb07g003830 {ECO:0000313|EMBL:EES14575.1}
TAIRAT3G48030_29.00E-12Unannotated protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000217830128850990+
Transcript Sequence

Network for GWHGAAEX008320

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.5zf-RING_2891333.80E-11
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.030
SRR2545915Juvenile tuber8.510
SRP108465SRR5643513five period of Gastrodia elata7.100
SRR5643514five period of Gastrodia elata14.840
SRR5643515five period of Gastrodia elata5.040
SRR5643524five period of Gastrodia elata9.610
SRR5643525five period of Gastrodia elata44.900
SRR5643528five period of Gastrodia elata43.900
SRR5643658five period of Gastrodia elata47.030
SRR5643659five period of Gastrodia elata0.760
SRR5643660five period of Gastrodia elata1.160
SRR5643661five period of Gastrodia elata1.350
SRR5643662five period of Gastrodia elata2.190
SRR5643663five period of Gastrodia elata1.400
SRR5643664five period of Gastrodia elata1.550
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_15.320
SRR6049655Rhizomagastrodiae_C368-T10_good_117.220
SRR6049656Rhizomagastrodiae_C368-T07_good_113.180
SRR6049657Rhizomagastrodiae_C368-T07_good_13.600
SRR6049658Rhizomagastrodiae_C368-T04_good_17.280
SRR6049659Rhizomagastrodiae_C368-T04_good_13.870
SRR6049660Rhizomagastrodiae_C368-T01_good_121.480
SRR6049661Rhizomagastrodiae_C368-T04_good_16.170
SRR6049662Rhizomagastrodiae_C368-T01_good_146.420
SRR6049663Rhizomagastrodiae_C368-T01_good_142.740
SRR6049664Rhizomagastrodiae_C368-T10_good_120.970
SRR6049665Rhizomagastrodiae_C368-T10_good_120.970
SRP279888GastroGastrodia elata tuber 0.06
JuvenJuvenile tuber0.39
Mother_GastroMother tuber of Gastrodia elata 3.04
Mother_JuvenMother tuber of Juvenile 0.08