Detail information of GWHGAAEX008323/evm.TU.scaffold_214.34
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG0014 | 4.00E-61 | MADS box transcription factor |
| nr | gi|482514620|gb|AGK07583.1| | 5.79E-111 | SOC1 [Dendrobium hybrid cultivar] |
| Swissprot | tr|A2Z9Q7|MAD56_ORYSI | 2.00E-71 | MADS-box transcription factor 56 |
| trEMBL | tr|M9XL26|M9XL26_9ASPA | 2.00E-111 | SOC1 {ECO:0000313|EMBL:AGK07583.1} |
| TAIR | AT2G45660 | 4.00E-61 | AGAMOUS-like 20 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000217 | 954397 | 991671 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008323
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module1 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00319.17 | SRF-TF | 10 | 57 | 1.00E-26 |
| PF01486.16 | K-box | 83 | 170 | 1.90E-22 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MADS-MIKC |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.510 |
| SRR2545915 | Juvenile tuber | 3.390 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 1.500 |
| SRR5643514 | five period of Gastrodia elata | 2.550 | |
| SRR5643515 | five period of Gastrodia elata | 1.480 | |
| SRR5643524 | five period of Gastrodia elata | 3.210 | |
| SRR5643525 | five period of Gastrodia elata | 34.450 | |
| SRR5643528 | five period of Gastrodia elata | 28.080 | |
| SRR5643658 | five period of Gastrodia elata | 45.970 | |
| SRR5643659 | five period of Gastrodia elata | 3.230 | |
| SRR5643660 | five period of Gastrodia elata | 2.180 | |
| SRR5643661 | five period of Gastrodia elata | 2.650 | |
| SRR5643662 | five period of Gastrodia elata | 3.530 | |
| SRR5643663 | five period of Gastrodia elata | 2.530 | |
| SRR5643664 | five period of Gastrodia elata | 2.620 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 1.600 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 1.440 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 1.970 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 1.110 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 1.080 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 0.960 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 1.120 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 1.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.020 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 1.230 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 2.630 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 2.630 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 3.51 |
| Juven | Juvenile tuber | 4.48 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.49 | |
| Mother_Juven | Mother tuber of Juvenile | 4.40 |