Detail information of GWHGAAEX008324/evm.TU.scaffold_214.37
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG4197 | 2.00E-85 | FOG: PPR repeat |
| nr | gi|743886174|ref|XP_010910082.1| | 0 | PREDICTED: pentatricopeptide repeat-containing protein At4g21705, mitochondrial [Elaeis guineensis] |
| Swissprot | tr|Q84JR3|PP334_ARATH | 2.00E-143 | Pentatricopeptide repeat-containing protein At4g21705, mitochondrial (Precursor) |
| trEMBL | tr|M0RWK6|M0RWK6_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr1P02980_001} |
| TAIR | AT1G60770 | 2.00E-85 | Tetratricopeptide repeat (TPR)-like superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000217 | 1026443 | 1029038 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008324
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01535.19 | PPR | 152 | 180 | 0.00022 |
| PF13041.5 | PPR_2 | 188 | 230 | 5.40E-08 |
| PF01535.19 | PPR | 329 | 352 | 0.026 |
| PF01535.19 | PPR | 365 | 386 | 0.32 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 1.100 |
| SRR2545915 | Juvenile tuber | 1.660 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 3.600 |
| SRR5643514 | five period of Gastrodia elata | 2.690 | |
| SRR5643515 | five period of Gastrodia elata | 1.740 | |
| SRR5643524 | five period of Gastrodia elata | 1.980 | |
| SRR5643525 | five period of Gastrodia elata | 1.380 | |
| SRR5643528 | five period of Gastrodia elata | 1.180 | |
| SRR5643658 | five period of Gastrodia elata | 0.920 | |
| SRR5643659 | five period of Gastrodia elata | 5.040 | |
| SRR5643660 | five period of Gastrodia elata | 6.110 | |
| SRR5643661 | five period of Gastrodia elata | 1.930 | |
| SRR5643662 | five period of Gastrodia elata | 6.980 | |
| SRR5643663 | five period of Gastrodia elata | 7.070 | |
| SRR5643664 | five period of Gastrodia elata | 5.560 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 2.660 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 3.540 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 3.880 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 2.320 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 2.310 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 1.790 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 2.830 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 3.010 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 4.140 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 3.200 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 4.050 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 4.050 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.27 |
| Juven | Juvenile tuber | 4.19 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 1.06 | |
| Mother_Juven | Mother tuber of Juvenile | 1.59 |