Gene detail

Detail information of GWHGAAEX008325/evm.TU.scaffold_214.38

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|743776169\|ref\|XP_010918485.1\|	2.17E-155	PREDICTED: uncharacterized protein LOC105042844 [Elaeis guineensis]
trEMBL	tr\|M0SXT8\|M0SXT8_MUSAM	4.00E-149	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr5P12090_001}
TAIR	AT4G28260	2.00E-112	Unannotated protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000217	1048143	1051111	-

Transcript Sequence
>GWHTAAEX008325 CTCTCTCTCTCTCTCTCTCTCTCAAGTTGTTGATCTGCTGGAGATGGCGCTGGAGATGGAGGATTTTGACTCTCGTGCTGCTGTTCTTCGTTCTCAAAGATTAAAACTCAGTAAGAAACGATCGATACGATTGTTTTCCCCGGTATGTCAAAGAGCACCTCAAAAACCTAGTAATTAGGGTTTCTTTAACTTTGTTTGTCCTCATCGTCGCTGAGACGACATTCTATTCTGGACTCCAGCCATATTTTATTTAAAACGAACTTAGGTTTTGGTTCTGCTCTCAAGATTCCTAGCTTGTTCTGGTTTTTGAATTGCGTGCGGGTGGTGGAAAAAGGTTTCCTTATAATTCCCCTTTGTTTGTAAACTCACCTTTTACTCCGAGCTGGAGAATTTGTTCGCATGTCTATACTACTGTGTAATCAACTTAATGAAAATTGAAAATCAAGCAGACAATTAGTGTTAAAAGATCGGACTAAATTTGGGGAAATTAGAGGATCCGAACTAGTTTGAATTGATGGTTAGAAAAGATTTACCAGTCAAGAGCGTTGGAACTCTGAATTTGAGAGATGTAGCGGCAAGGGCGACTCTGCGTGCCCTGAGGCTAAAGGGACATGCCTACATCGAGCTGAGACAACTGACAAAAAGAAGCATCTTCTTCTGCACGCTCTGCCTTACCCAGTGTTATAGTGAATCTGCCCTCTACGATCATCTCCGAGGAAATCTCCACTCTAAAAGATATACTTCTGCTAAAATTACACTTTTGCTCCCCAACCCTTGGCCCTTTAACGATGGGGTTCTTTTCTTCGACAACACCCGGGAAAACGATCTTAATCTCGTTTCAGAGTTTAGGAAGGGCGCTTTTTCCACTGCCAATGAAGGAGGGTGTGCAGCCACTGTCAATGGAGATGCAGTAACTTCAAAGTTTAGATGCGATCGACCTGAGATAGCATCAGACAATATTGATCATATTAGAAATGTTTGTAATGCCGGAAATTATGGCAAGGTTAATGGCCATGCAATTTATAATTCTTATTCTGGCAGCCAAAATAAAAGCCAATCTGTCGTTGGTCAAGATAAAATGAAAAAGTGCAAGGGTGTGCAGGAAGATTTTAGCATTTCTTACGTCCTTCCTAATGATGAATTTTTAAATTATGAGCTGAAAATCATTGGTTTTGGGCACATGGGGGCTAAAATTCACAAGGAAGGTGGGACGAGCTGCAAGTTTAGCAGAGTATGGTGTGCTTGGCTGGGTGATGCAAGTTTTGATGGTTGTGATGATGAGTTATTAGCATCCCCGAAGTGTGATTTTGCCATAGTGAACCTCTCTTACACCTATAATCTTGGTAGAAAATTTGCCATGGAGGATGAGAATGCGCCTCCCTCTACTGATTCTTTCTTTGAGATTGATGAGTCTGGAAGAAGAACTAAGAAGAGGAAGAAATCATTCTCAGATCCAGAGGATAATTCTGAGGCCTCTGCGGACCGCCTTGCTTCTTCCTGTGAGCATCACAATAAAGATTGCTGTAGTTTTGTTTTCTCACATTCTAGTTCTTTCGGACGAGCCGGCAGGCGTGTTGGGCGTGATTACTTGGGGAAACAAAAATGTTCATTTTCTGAAAGGAATTGTGATATCTGCCAGCAGCCTATGCTTCCTGGGAAGGATGTTGCTACTTTGCTGAATTTAAAAACTGGCAGATTCGCATGCAGTAGCAGGAATATCAATGGAGCATTCCATCTGTTTCACGCCTCTTGCCTTATTCATTGGGTGCTGTTTTCTGAGTTTGAGTTGTGGGCCAAACAGGCAATGAATCCCAAAAGAACTCGAGGACGCAAAGGGAAAGCATCTAATAAGAATCACATGTTCTCTTCTATATTTTGCCCTGAATGTCAAGGAACAGGCATTCATATTGTAGGGAATGTATTGGAGAGGCCTACTGTTCCTCTATCCGAGACATTCATGTACAAACTAAACGTCATTAAAGCTCAAAAAGCATGGATGAATAACCCAGAAAGTCTTCAGAAATGCTCTACCGGACTCTGTTTTCCAGCTGAGACCACGACAAAGTTGCAGGGAAAGGAGATGCCAGAGAAGCTGCTGCTCTTCTACCGAGCTGGTGAATAGAATTTGAGTGTGGTGATTGTGGTTATTGAATGATTCTAGCAAAGAGGTAATGTAAATTTCTAACTGTTTTTCAGAGTATTGTGTTGACACTATGATTACGTGTGTTTCGTTAGCTGTGAGTGAAGTGTGATGATACACACTGGAATTCACATGGTGGATATGTATATAAGCTTGACACGCGCAAAGCACCTTTGAATATGTTGTTTAAAAGGCACATACGTGTTCACGTGTGCATATACATGATGTACATATATATATGCTTATACATCCATAGTGGGTAATGGGGAGATCCTGAACAGCATAATGGTGGTGGCATTATTATGCATGTTATGAGATGTTAAAGTGTTGTTCGTATCCCTACTACTTGATATTGTAGTCCTCAAGTGATTCAGGGCTGATTGTGACAGCAATTTTTTTTCTTATTAAATAAAACATATTTTATATCTTTTGGGTAATTATTTAAGCTTTTTTTTTTGTTTTTCATGAAAACTAGCTTATGTTCATTATTCTTTCATCACCACCACCAATAACAACAACAATAGCAATAACACCAAGCCTTAAGGTGGGGCCTGCTTCCTGAACCCTTTGTTTCTATTGTGCA

Network for GWHGAAEX008325

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF12874.6	zf-met	47	71	2.50E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	65.170
SRP064423	SRR2545915	Juvenile tuber	45.540
SRP108465	SRR5643513	five period of Gastrodia elata	54.230
	SRR5643514	five period of Gastrodia elata	51.740
	SRR5643515	five period of Gastrodia elata	60.690
	SRR5643524	five period of Gastrodia elata	53.310
	SRR5643525	five period of Gastrodia elata	100.890
	SRR5643528	five period of Gastrodia elata	93.040
	SRR5643658	five period of Gastrodia elata	144.130
	SRR5643659	five period of Gastrodia elata	27.330
	SRR5643660	five period of Gastrodia elata	27.450
	SRR5643661	five period of Gastrodia elata	25.450
	SRR5643662	five period of Gastrodia elata	31.620
	SRR5643663	five period of Gastrodia elata	28.090
	SRR5643664	five period of Gastrodia elata	29.720
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	51.810
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	43.960
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	47.930
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	56.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	60.070
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	72.770
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	57.070
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	58.070
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	34.270
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	45.140
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	43.510
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	43.510
SRP279888	Gastro	Gastrodia elata tuber	35.67
	Juven	Juvenile tuber	43.41
	Mother_Gastro	Mother tuber of Gastrodia elata	95.31
	Mother_Juven	Mother tuber of Juvenile	105.64