Gene detail

Detail information of GWHGAAEX008331/evm.TU.scaffold_214.47

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG3534	p53 inducible protein PIR121
nr	gi\|743776865\|ref\|XP_010918846.1\|	PREDICTED: protein PIR [Elaeis guineensis]
Swissprot	tr\|Q5S2C3\|PIR_ARATH	Protein PIR
trEMBL	tr\|I1H9U5\|I1H9U5_BRADI	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G75470.1}
TAIR	AT5G18410	transcription activators

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000217	1160577	1269723	-

Transcript Sequence
>GWHTAAEX008331 ATGGAGCCAACAAGGAAGACGGTGCCGAAGCTGGGGATGATGTGGGCTGGGATGGAGGTGAGGAAGATGATGCCGGTGCCGGGGATGATGCGTGCTGGAGATGATGAAGTCAAGGACTCGAAAAAGGCCATAATTTTAAAATCTATTGAAACATCTGACACTGAAAGGTTCAGAGAAGTCAAAGGAAATATGTATGATGTTGTTATCGAAGGATTTCGGCTTCTTAGCAGATGGACTGGACGTGTTTGGGAGCAGTGTGCTTGGAAGTTTTCACGCCCTTGTAAAGATGCAGCGACTTCAGATTCCCCTGGAGGCTCAACTACCCTTTTTGATTATGAAAAGGTGGTACGATGGAACTACACCTCAGATGAAAAAAAAGCTTTATTAGAGCTTGTGAGTTACATAAAGAGTGTTGGCTCAATGACGCAACGTTGTGACACACTTGTTGCGGATGCTTTATGGGAGACGATTCATGAAGAAGTACAAGATTTTGTTCAGGATAAATTAGACATGATGTTGCGAACTACATTTCGTAAAAAGAAAGATCAATCGAGGATTCTATCTGATATGCGCACGCTTTCTGCCGATTGGATGGCTAATACCAGCAGCCATGATACTGAACTGCGATCATTACATGGGGAACATAAAGAGGCTCAACCAAATATGCGCTGTGCAAGACCAGTTGCACCTACTGCTGCTCAGGTTCATTGTCTACAATTTCTGATCTGTGAGTTGGTTTCTGGTGGTAATTTAAAAAAGCACGGAGTTTTTTTCGGGAACAGCACTTCTGGAATTGCAGTTGATGATCTCAAGCAGTTAGAGACATTCTTTTACAAGCTCAGTTTTTTTCTTCATATTTTGGATTATACAGCTACAATAGGCACATTGACGGATCTTGGGTTCCTTTGGTTTAGGGAGTTCTATTTAGAATCTTCTCGTGTAATCCAGTTTCCAATCGAATGCTCCCTTCCATGGATGTTGGTGGATAATATAATGGAGTTTCATGATCCTGGTCTACTTGAAAGCATTCTGATGCCATTTGATATTTACAATGATTCTGCTCAGCATGCATTGACTATTCTCAAGCAACGATTTCTTTATGATGAAATTGAAGCTGAGGCTGATCTTTGTTTCGATCAACTTCTCTTTAGACTCAATGAGATTATTTTTTCGTATTACAAATGCTGGGCTGCAAGTGATTTACTTGATCAGTCATTTATAGCTTCATGTGATGATGGTGACAAATATGCTGTGATACCTTTGAGATTTAGTGAAATATTGAAGCTTAGGAAAGTGAAGTTGCTAGGAAGGACTATTGATTTAAGAAACTTGCTCACTCAAAGGTTGAATAAATTATTTCGAGAGAACATTGATTTTCTTTTTGACCGATATGAGGGTCAGGATTTGTGTGCCATTGTGGAATTACAAAAGCTTATGGATATTCTGAAGCGCACTCATGACTTGCTGTCAAAAGATCTTGAACTAGACTCTTTTATTCTGATGCTGAATGAAGTGCAAGAAAATCTTTCTCTTATTTCTTATTCAAGCCGTCTTGCCTCTCAGATTTGGACAGAAATGCAGAACGACTTTTTTCCAAACTTTATCCTCTGTAATATTACTCAACGCTTCATTCGGACAGTAAAGGCGGAACCACAAGCTTCCCAAAGGGAAGCAGTTCCTAACGGGAAGTCTTACTTTCTCTGTGGTTCTCAGGAGCTGGATGCTGCATACCACAATCTTGCTGACCTGTACTCTGAGTTCTTTGGATTTCCTCACATGCTTGCTGTTGTCCAACTTATTGGCCTTAAATCGTTACCTTGGATTATAAGGGCCATTTTGGATCATATAGCAATGAAGGTGAATACAATGATGCCTAAAATACATGGGCTACAAGATGCATTGCCAAAATCTATGGGACTCGTTCCATTTGATGGTGGTGTGCCTGGTTCTCAAAAGATAATTCATGAAATGTTGACCTGGGGAATTAAATCTGAACTCAAAGCTGATGTGCTTCAAAGTCTAAAGGAGGTGGGAAGTGCACTCTATTGGACAAGCCTTCTTGATCTTGTACTGAGGGAAATAGACACTATGCAGTTCATGCAAACCTCCCCTTGGTTGGGGATTGTCCCGGGAAGTGATGGACAAGTAAAAGAGACTGATAGTGACATGAGTCCTCTTTTCAGTTTGTTCAGATCGGTTAAAACAGCAGTTGTATCAAATGCAAGTTGTCAAGATCCAAATTCCTTCCACGTCTTGTCAAAGCAAGCGGAAGCTGCTGCTCTCATGTACAAAAAGAATATTACATCCACAAGTGTGCTTGAATATGCTCTAGCATTTACAAGTGCAGCCTTGGAAAGGCATTACAGTAAACTTAGTGCTAATCCGAAGACAGGGTTTGTTGACATTACTGCTTCAAAGGATTTCTATCGAATTTTCAGTGGTCTTCAATTTGAATATCTGGAGGAGAGTGTTCGTGATTTTTCTTCCAAAAAACAAGATTTGTGGGGCGATTCAGTCGCTTGGGCTGGTTGTACTATCATCTATTTACTTGGCCAACAGCTGCAGTTTGAACTCTTCGATTTCTCCTATCAGTTACTTAACATCGCTGAAGTAGAGAATGCAGCAACTATAGCCCAATCTGCAAATTACTTACAGGGGTACGAGAGCCTTCTTGAAGTCATGAGAAAGGCAAGAAGACTGAACAATCACGTATTCTCCATGCTCCGAGCACGCTGTCCGCTGGAGGACAAGGTTGCCTGCGCAATAAAGCAAAGTGGTGCCCCTCAGCATAAAATTACATTTGTTAATGCCCTCTCTGCCTTTGAGACACTGCCCCAGAAAACTCATTCTTAA

Network for GWHGAAEX008331

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05994.10	FragX_IP	63	908	5.80E-278

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05749	CYFIP	RNA transport	map03013
K05749	CYFIP	Regulation of actin cytoskeleton	map04810

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	44.400
SRP064423	SRR2545915	Juvenile tuber	46.780
SRP108465	SRR5643513	five period of Gastrodia elata	23.340
	SRR5643514	five period of Gastrodia elata	31.060
	SRR5643515	five period of Gastrodia elata	25.740
	SRR5643524	five period of Gastrodia elata	26.860
	SRR5643525	five period of Gastrodia elata	28.410
	SRR5643528	five period of Gastrodia elata	19.850
	SRR5643658	five period of Gastrodia elata	27.640
	SRR5643659	five period of Gastrodia elata	21.730
	SRR5643660	five period of Gastrodia elata	20.650
	SRR5643661	five period of Gastrodia elata	19.970
	SRR5643662	five period of Gastrodia elata	16.990
	SRR5643663	five period of Gastrodia elata	20.770
	SRR5643664	five period of Gastrodia elata	18.900
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	30.080
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	20.440
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	36.220
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	30.460
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	23.540
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	25.440
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	30.490
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.660
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	30.740
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.810
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	28.880
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	28.880
SRP279888	Gastro	Gastrodia elata tuber	28.36
	Juven	Juvenile tuber	30.92
	Mother_Gastro	Mother tuber of Gastrodia elata	22.81
	Mother_Juven	Mother tuber of Juvenile	22.18