Detail information of GWHGAAEX008332/evm.TU.scaffold_2142.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672133471|ref|XP_008790358.1|0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 4 [Phoenix dactylifera]
Swissprottr|Q9FL03|SCL4_ARATH6.00E-149Scarecrow-like protein 4
trEMBLtr|M0SJ67|M0SJ67_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P30530_001}
TAIRAT5G667702.00E-148GRAS family transcription factor

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000021347202869-
Transcript Sequence

Network for GWHGAAEX008332

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF03514.13GRAS1805429.70E-99
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms10.370
SRR2545915Juvenile tuber12.020
SRP108465SRR5643513five period of Gastrodia elata23.390
SRR5643514five period of Gastrodia elata24.950
SRR5643515five period of Gastrodia elata23.100
SRR5643524five period of Gastrodia elata26.110
SRR5643525five period of Gastrodia elata11.780
SRR5643528five period of Gastrodia elata7.030
SRR5643658five period of Gastrodia elata9.980
SRR5643659five period of Gastrodia elata20.170
SRR5643660five period of Gastrodia elata19.730
SRR5643661five period of Gastrodia elata23.610
SRR5643662five period of Gastrodia elata13.910
SRR5643663five period of Gastrodia elata14.990
SRR5643664five period of Gastrodia elata20.660
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_128.310
SRR6049655Rhizomagastrodiae_C368-T10_good_130.580
SRR6049656Rhizomagastrodiae_C368-T07_good_129.180
SRR6049657Rhizomagastrodiae_C368-T07_good_122.530
SRR6049658Rhizomagastrodiae_C368-T04_good_121.050
SRR6049659Rhizomagastrodiae_C368-T04_good_117.600
SRR6049660Rhizomagastrodiae_C368-T01_good_123.200
SRR6049661Rhizomagastrodiae_C368-T04_good_119.950
SRR6049662Rhizomagastrodiae_C368-T01_good_126.700
SRR6049663Rhizomagastrodiae_C368-T01_good_123.690
SRR6049664Rhizomagastrodiae_C368-T10_good_134.320
SRR6049665Rhizomagastrodiae_C368-T10_good_134.320
SRP279888GastroGastrodia elata tuber 10.45
JuvenJuvenile tuber23.69
Mother_GastroMother tuber of Gastrodia elata 10.98
Mother_JuvenMother tuber of Juvenile 12.47