Detail information of GWHGAAEX008333/evm.TU.scaffold_215.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|298674288|ref|YP_003726038.1| | 2.00E-21 | 50S ribosomal protein L13 [Methanohalobium evestigatum Z-7303] |
| KOG | KOG3204 | 9.00E-129 | 60S ribosomal protein L13a |
| nr | gi|672110032|ref|XP_008793237.1| | 6.65E-133 | PREDICTED: 60S ribosomal protein L13a-4 [Phoenix dactylifera] |
| Swissprot | tr|Q9FKC0|R13A4_ARATH | 3.00E-129 | 60S ribosomal protein L13a-4 |
| trEMBL | tr|B3TLQ7|B3TLQ7_ELAGV | 8.00E-131 | Ribosomal protein L13a {ECO:0000313|EMBL:ACF06488.1} |
| TAIR | AT5G48760 | 9.00E-129 | Ribosomal protein L13 family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000214 | 49794 | 55922 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008333
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00572.17 | Ribosomal_L13 | 13 | 121 | 1.30E-08 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02872 | RP-L13Ae, RPL13A | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
| GO:0015934 | Cellular Component | large ribosomal subunit |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 453.780 |
| SRR2545915 | Juvenile tuber | 627.690 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 485.940 |
| SRR5643514 | five period of Gastrodia elata | 443.280 | |
| SRR5643515 | five period of Gastrodia elata | 476.760 | |
| SRR5643524 | five period of Gastrodia elata | 449.170 | |
| SRR5643525 | five period of Gastrodia elata | 325.200 | |
| SRR5643528 | five period of Gastrodia elata | 313.350 | |
| SRR5643658 | five period of Gastrodia elata | 246.390 | |
| SRR5643659 | five period of Gastrodia elata | 651.540 | |
| SRR5643660 | five period of Gastrodia elata | 638.840 | |
| SRR5643661 | five period of Gastrodia elata | 710.610 | |
| SRR5643662 | five period of Gastrodia elata | 762.540 | |
| SRR5643663 | five period of Gastrodia elata | 691.030 | |
| SRR5643664 | five period of Gastrodia elata | 801.650 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 616.320 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 637.230 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 695.250 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 622.620 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 789.540 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 774.770 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 727.480 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 728.540 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 730.760 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 791.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 634.500 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 634.500 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 1,086.37 |
| Juven | Juvenile tuber | 828.92 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 348.36 | |
| Mother_Juven | Mother tuber of Juvenile | 505.91 |