Detail information of GWHGAAEX008334/evm.TU.scaffold_215.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG01162.00E-84RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains
nrgi|743847772|ref|XP_010939185.1|2.73E-142PREDICTED: putative G3BP-like protein isoform X1 [Elaeis guineensis]
Swissprottr|Q1PDV2|SRC28_ARATH5.00E-06Serine/arginine-rich SC35-like splicing factor SCL28
trEMBLtr|M0SJY1|M0SJY1_MUSAM2.00E-125Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P00640_001}
TAIRAT3G251502.00E-84Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000214105281125751+
Transcript Sequence

Network for GWHGAAEX008334

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02136.19NTF2161313.20E-32
PF00076.21RRM_13153741.00E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms37.990
SRR2545915Juvenile tuber34.560
SRP108465SRR5643513five period of Gastrodia elata18.530
SRR5643514five period of Gastrodia elata20.690
SRR5643515five period of Gastrodia elata23.360
SRR5643524five period of Gastrodia elata18.430
SRR5643525five period of Gastrodia elata20.000
SRR5643528five period of Gastrodia elata13.010
SRR5643658five period of Gastrodia elata14.540
SRR5643659five period of Gastrodia elata22.220
SRR5643660five period of Gastrodia elata26.080
SRR5643661five period of Gastrodia elata23.490
SRR5643662five period of Gastrodia elata21.450
SRR5643663five period of Gastrodia elata21.180
SRR5643664five period of Gastrodia elata24.830
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.150
SRR6049655Rhizomagastrodiae_C368-T10_good_120.580
SRR6049656Rhizomagastrodiae_C368-T07_good_122.120
SRR6049657Rhizomagastrodiae_C368-T07_good_124.660
SRR6049658Rhizomagastrodiae_C368-T04_good_124.740
SRR6049659Rhizomagastrodiae_C368-T04_good_126.120
SRR6049660Rhizomagastrodiae_C368-T01_good_124.170
SRR6049661Rhizomagastrodiae_C368-T04_good_121.580
SRR6049662Rhizomagastrodiae_C368-T01_good_127.260
SRR6049663Rhizomagastrodiae_C368-T01_good_123.950
SRR6049664Rhizomagastrodiae_C368-T10_good_122.880
SRR6049665Rhizomagastrodiae_C368-T10_good_122.880
SRP279888GastroGastrodia elata tuber 36.41
JuvenJuvenile tuber28.91
Mother_GastroMother tuber of Gastrodia elata 26.54
Mother_JuvenMother tuber of Juvenile 25.58