Detail information of GWHGAAEX008336/evm.TU.scaffold_215.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|343085920|ref|YP_004775215.1| | 7.00E-35 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| nr | gi|743870898|ref|XP_010906158.1| | 0 | PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Elaeis guineensis] |
| Swissprot | tr|Q9S7I6|RPK2_ARATH | 0 | LRR receptor-like serine/threonine-protein kinase RPK2 (Precursor) |
| trEMBL | tr|W9QIF0|W9QIF0_9ROSA | 0 | LRR receptor-like serine/threonine-protein kinase RPK2 {ECO:0000313|EMBL:EXB38107.1} |
| TAIR | AT3G02130 | 0 | receptor-like protein kinase 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000214 | 147195 | 160729 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008336
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08263.11 | LRRNT_2 | 38 | 76 | 7.90E-10 |
| PF13855.5 | LRR_8 | 169 | 229 | 4.30E-07 |
| PF00560.32 | LRR_1 | 243 | 265 | 0.04 |
| PF00069.24 | Pkinase | 832 | 1030 | 7.20E-43 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | RLK-Pelle_LRR-XV |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005515 | Molecular Function | protein binding |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 13.980 |
| SRR2545915 | Juvenile tuber | 13.560 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 7.700 |
| SRR5643514 | five period of Gastrodia elata | 7.010 | |
| SRR5643515 | five period of Gastrodia elata | 7.170 | |
| SRR5643524 | five period of Gastrodia elata | 6.970 | |
| SRR5643525 | five period of Gastrodia elata | 9.010 | |
| SRR5643528 | five period of Gastrodia elata | 6.810 | |
| SRR5643658 | five period of Gastrodia elata | 6.880 | |
| SRR5643659 | five period of Gastrodia elata | 9.790 | |
| SRR5643660 | five period of Gastrodia elata | 8.040 | |
| SRR5643661 | five period of Gastrodia elata | 8.310 | |
| SRR5643662 | five period of Gastrodia elata | 9.590 | |
| SRR5643663 | five period of Gastrodia elata | 8.310 | |
| SRR5643664 | five period of Gastrodia elata | 7.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 8.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.780 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 8.980 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.050 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.930 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.920 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 9.210 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 9.090 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.790 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.790 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 8.43 |
| Juven | Juvenile tuber | 16.27 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 9.14 | |
| Mother_Juven | Mother tuber of Juvenile | 13.52 |