Detail information of GWHGAAEX008337/evm.TU.scaffold_215.6


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|262196624|ref|YP_003267833.1|2.00E-23RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
KOGKOG01182.00E-41FOG: RRM domain
nrgi|672125150|ref|XP_008785986.1|1.29E-51PREDICTED: glycine-rich RNA-binding protein 10-like [Phoenix dactylifera]
Swissprottr|Q9FNR1|RBG3_ARATH7.00E-42Glycine-rich RNA-binding protein 3, mitochondrial (Precursor)
trEMBLtr|M0TY68|M0TY68_MUSAM1.00E-51Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P07090_001}
TAIRAT5G610302.00E-41glycine-rich RNA-binding protein 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000214219158222161+
Transcript Sequence

Network for GWHGAAEX008337

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00076.21RRM_1331029.40E-22
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12741HNRNPA1_3 Spliceosome map03040

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms137.380
SRR2545915Juvenile tuber144.620
SRP108465SRR5643513five period of Gastrodia elata263.240
SRR5643514five period of Gastrodia elata257.960
SRR5643515five period of Gastrodia elata205.420
SRR5643524five period of Gastrodia elata228.030
SRR5643525five period of Gastrodia elata92.930
SRR5643528five period of Gastrodia elata71.050
SRR5643658five period of Gastrodia elata41.220
SRR5643659five period of Gastrodia elata289.330
SRR5643660five period of Gastrodia elata315.310
SRR5643661five period of Gastrodia elata335.800
SRR5643662five period of Gastrodia elata320.560
SRR5643663five period of Gastrodia elata283.960
SRR5643664five period of Gastrodia elata314.620
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1219.230
SRR6049655Rhizomagastrodiae_C368-T10_good_1226.600
SRR6049656Rhizomagastrodiae_C368-T07_good_1264.810
SRR6049657Rhizomagastrodiae_C368-T07_good_1190.610
SRR6049658Rhizomagastrodiae_C368-T04_good_1179.820
SRR6049659Rhizomagastrodiae_C368-T04_good_1139.170
SRR6049660Rhizomagastrodiae_C368-T01_good_1232.240
SRR6049661Rhizomagastrodiae_C368-T04_good_1179.440
SRR6049662Rhizomagastrodiae_C368-T01_good_1295.230
SRR6049663Rhizomagastrodiae_C368-T01_good_1288.220
SRR6049664Rhizomagastrodiae_C368-T10_good_1310.200
SRR6049665Rhizomagastrodiae_C368-T10_good_1310.200
SRP279888GastroGastrodia elata tuber 275.62
JuvenJuvenile tuber319.71
Mother_GastroMother tuber of Gastrodia elata 59.24
Mother_JuvenMother tuber of Juvenile 112.87