Detail information of GWHGAAEX008338/evm.TU.scaffold_215.7


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|159045475|ref|YP_001534269.1|9.00E-56F0F1 ATP synthase subunit gamma [Dinoroseobacter shibae DFL 12 = DSM 16493]
KOGKOG15310F0F1-type ATP synthase, gamma subunit
nrgi|743870812|ref|XP_010906140.1|0PREDICTED: ATP synthase subunit gamma, mitochondrial-like [Elaeis guineensis]
Swissprottr|P26360|ATPG3_IPOBA0ATP synthase subunit gamma, mitochondrial (Precursor)
trEMBLtr|B3TLX5|B3TLX5_ELAGV0ATP synthase subunit gamma {ECO:0000256|RuleBase:RU004001}
TAIRAT2G330400gamma subunit of Mt ATP synthase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000214224220262254-
Transcript Sequence

Network for GWHGAAEX008338

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00231.18ATP-synt443197.80E-74
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02136ATPeF1G, ATP5C1, ATP3 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0015986Biological ProcessATP synthesis coupled proton transport
GO:0046933Molecular Functionproton-transporting ATP synthase activity, rotational mechanism
GO:0045261Cellular Componentproton-transporting ATP synthase complex, catalytic core F(1)

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms96.010
SRR2545915Juvenile tuber152.250
SRP108465SRR5643513five period of Gastrodia elata178.380
SRR5643514five period of Gastrodia elata292.580
SRR5643515five period of Gastrodia elata207.120
SRR5643524five period of Gastrodia elata284.080
SRR5643525five period of Gastrodia elata138.030
SRR5643528five period of Gastrodia elata128.070
SRR5643658five period of Gastrodia elata97.310
SRR5643659five period of Gastrodia elata122.930
SRR5643660five period of Gastrodia elata136.280
SRR5643661five period of Gastrodia elata151.370
SRR5643662five period of Gastrodia elata171.010
SRR5643663five period of Gastrodia elata147.380
SRR5643664five period of Gastrodia elata170.220
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1187.600
SRR6049655Rhizomagastrodiae_C368-T10_good_1155.730
SRR6049656Rhizomagastrodiae_C368-T07_good_1208.140
SRR6049657Rhizomagastrodiae_C368-T07_good_1143.530
SRR6049658Rhizomagastrodiae_C368-T04_good_1143.590
SRR6049659Rhizomagastrodiae_C368-T04_good_1118.630
SRR6049660Rhizomagastrodiae_C368-T01_good_1134.220
SRR6049661Rhizomagastrodiae_C368-T04_good_1145.190
SRR6049662Rhizomagastrodiae_C368-T01_good_1205.680
SRR6049663Rhizomagastrodiae_C368-T01_good_1165.270
SRR6049664Rhizomagastrodiae_C368-T10_good_1253.400
SRR6049665Rhizomagastrodiae_C368-T10_good_1253.400
SRP279888GastroGastrodia elata tuber 196.61
JuvenJuvenile tuber163.62
Mother_GastroMother tuber of Gastrodia elata 95.22
Mother_JuvenMother tuber of Juvenile 112.75