Gene detail

Detail information of GWHGAAEX008349/evm.TU.scaffold_215.21

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG4197	1.00E-166	FOG: PPR repeat
nr	gi\|672171463\|ref\|XP_008805802.1\|	0	PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Phoenix dactylifera]
Swissprot	tr\|Q9LNP2\|PPR47_ARATH	3.00E-167	Putative pentatricopeptide repeat-containing protein At1g17630
trEMBL	tr\|A5B4B4\|A5B4B4_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN78640.1}
TAIR	AT1G17630	1.00E-166	Pentatricopeptide repeat (PPR-like) superfamily protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000214	465311	467735	-

Transcript Sequence
>GWHTAAEX008349 AGGAGGATAAATAGCAGAGCAGTATACACATGAATGTTTCATGATCCTGGATTTCTGCTCCTCGGATGCAGGAGCGTTGGAGCTCCTCCTCCGCCGATGCACCGCCCCTGTGCAAGTTCATCAGATCCACGCTGCGATCGTCGTCTCCGGCCAGATGCAACGCTCGCAGTTCCTCTGCGCCCGTCTCATCTCCGTCTACTCTTATCTCAACCTCCTCCCCTCGGCCGTCTCCCTCTTCCTCTACTCCTCCTCTTTGGCCCCTCCTTCCTCGATCCTCTGCAACTCCATCCTCCGCTCCCTTCTCTCCCATTCTGACCACCTCCGAGCCATCTTCCTTTACCGCCGGTCTCTCTCCCTGGGCGCCATTCCCGATGGTTTCACCTTCCCTCTCGCCCTCCGCGCCTGTGCCTGCCTCTCCAACCCCTACCTCGGCCTCCCAGTCCACGCCCAGGCCGTCGCCATGGGCTTCGGCCACCACCTCCACGTCTCCCACGAGCTGCTCTCTCTCTACGCGCGCATCGGCCGAATGGACCTTGCCCGCACGGTGTTCGATGGATTGCCCGCTCGAACCGTCGTCACCTGGAACGTCCTAGTCTCCGGCTACGCCCGGAACCGCCAGTGCGACCACGCGCGAAAGGTGTTCGACGTTATGCCCGTTGCGGGGCTGAGGCCCAATCCGGTCACCTGGACGTCGATGCTGTCCGCATACGCCCGGTGCCAGAGGCACGACGATGTGATCGTGGCTTTTGATGAGATGAGGGCCTGCTGCTGCGCAGCCACCGCCGAGGCTGTCGCTGTTGCATTATCCGTCTGCCCTTACATATCCGCTGATGGGCTGGGGAAAGGGAAGCAGATGCACGGCTTTGCTAAGAGGAGTGGTTTCGAGGGATTCTCTTTTGTCAGGAACTCTCTTGTGTGCATGTACGGAAAGCTTGGCCACACCATGGATTCCGAGATACTGTTCTCCGAGCTTGAATGGAAGAATTTAGTGAGCTGGAACGCCCTGATCTCCAGCTATGCTGCTTCCGGATGCTGTGGCGAAGCTTACGCAGTCTTTCGCCGGTTGCGGGAAGCAGCGGGAGAGCCTGAGCCTGACGTGGTGAGCTGGAGCGCGGTGATTGGGAGCTTCGCCTCCTGCGGGGAGTTGGAAAATTCTGTGCATATCTTCCGGCTTATGCAAAGAACGTCGGCGGCGGCAGGAGTTCAGCCCAATGCTGTGACCATCGCCACTGTCCTCTCTGCCTGCGCTGAGCTTCTATCATTGGGCTCGGGCAGAGAGATTCATGCCCACACCATCAGAAGCTCTATGGATGGCAATATTTTGATACAGAACGCTTTGCTCAACTTGTACAGCAAGTGTGGTGGTTTCGGGTATGGTTGCCTGCTCTTCAAGAGGATGAAATGCAGGGATTTGATCAGCTGGAACTCCATGATCAACCTCTATGGAATGCATGGAGCCTGCGATGAGGCCCTCTGTGCATTTGAAGGCATGATTAGAAGCGGTGTGGAGCCAGACGGGATCACCTTTGTAGCAATTCTGTCTGCTTGCAGCCATTCAGGGAGAGTTGATATGGGGCGCAGAGTTTTTGATTCGATGGTTTGCGAGCACGGCATTTCACCCGGAATGGAACATTATTTGTGCATGGTGGATCTTCTTGGGCGGGCTGGGCTAATTAGGGAAGCAAGTGAGCTCATAGAGAAGATGCCTGTGAAGCCCAATGCTTGCGTTTGGGGAGCTCTGTTGAACTCTTGCAGGATACATGGAATTCATACAGACATGGCAGAGGATGCTGTTTCAAGGATTTTGGGGATTGAAGAGGGGATGATATCTGCAGGGAACAGCGCCCTGATATCTAGTATATATGCGGCGATCGGGAGATGGGAGGAATCGGCGAGGGTGAGGGTTGCGACAAGGAAGAGTGGGGTGAGAAAAAACCCTGGGCAGAGTTGGGTTGAGGTGAAGAAGAGGGCAGTCGCATTCTCAGCTGGTGGTTCATTGCCTCTTCTGGTGCAGAGGGAGCTTATGAGGTAATGGAAAACTTGAGCAGGCAGATGGAGAGCGAGAACCAAGTGTCAAATGACTGGCTCTTGTTGGATTTTAAGCTAGATGAAGAAGGATGCTGATGGTATGTTGATGTTTTAACGTTTATAAATAGACACCAATCATTCTTCTTTGTTAAACTGCCAAATAACATTACTGCTAGTGTGTGGCTTGGGTCAGGTCGGGTTGGGTCAGATATCTTATTGGCTAAACTTAATCTCGATCAGTTGGTTAGGCTGGTCTATGGCTGGGCCAAGTTGACATGTTAAATATGAAGCAGAAATTTAACTCAATAGTAGAAAGCAGCTATGCTATACTATACAAACCACTTGAAATTTATTTCTTGAACTACTTCCTGAGAAAACAAGCAATAAACAACTCTCC

Network for GWHGAAEX008349

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13041.5	PPR_2	177	225	5.50E-12
PF01535.19	PPR	317	344	5.10E-05
PF01535.19	PPR	354	381	0.014
PF13041.5	PPR_2	457	504	7.70E-09
PF01535.19	PPR	531	556	0.016

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	Molecular Function	protein binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	9.720
SRP064423	SRR2545915	Juvenile tuber	8.910
SRP108465	SRR5643513	five period of Gastrodia elata	13.860
	SRR5643514	five period of Gastrodia elata	12.630
	SRR5643515	five period of Gastrodia elata	11.860
	SRR5643524	five period of Gastrodia elata	11.790
	SRR5643525	five period of Gastrodia elata	7.130
	SRR5643528	five period of Gastrodia elata	10.930
	SRR5643658	five period of Gastrodia elata	5.670
	SRR5643659	five period of Gastrodia elata	22.690
	SRR5643660	five period of Gastrodia elata	21.520
	SRR5643661	five period of Gastrodia elata	30.910
	SRR5643662	five period of Gastrodia elata	21.880
	SRR5643663	five period of Gastrodia elata	16.170
	SRR5643664	five period of Gastrodia elata	19.870
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	9.650
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	11.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.500
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	7.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	6.370
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	5.700
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.160
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	6.400
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	10.470
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	9.180
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.560
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.560
SRP279888	Gastro	Gastrodia elata tuber	24.10
	Juven	Juvenile tuber	16.92
	Mother_Gastro	Mother tuber of Gastrodia elata	9.84
	Mother_Juven	Mother tuber of Juvenile	10.46