Gene detail

Detail information of GWHGAAEX008354/evm.TU.scaffold_215.25

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|332666557\|ref\|YP_004449345.1\|	5.00E-143	beta-galactosidase [Haliscomenobacter hydrossis DSM 1100]
KOG	KOG0626	0	Beta-glucosidase, lactase phlorizinhydrolase, and related proteins
nr	gi\|743837193\|ref\|XP_010936327.1\|	0	PREDICTED: beta-glucosidase 6 isoform X2 [Elaeis guineensis]
Swissprot	tr\|Q8L7J2\|BGL06_ORYSJ	0	Beta-glucosidase 6 (Precursor)
trEMBL	tr\|U6C7C4\|U6C7C4_DELGR	0	Uncharacterized protein {ECO:0000313\|EMBL:BAO04176.1}
TAIR	AT1G26560	0	beta glucosidase 40

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000214	675039	736434	+

Transcript Sequence
>GWHTAAEX008354 TTACTTTGCTATCATATTTTCTAAACAAATGCCTATAAAAAACCCAAGATTTTTTAAAATTTGTAGACAAATTTTAATACGATATTTGACATCTAAGAATTTTTCATTATAACTTATTAAGAGCAATCGTATACAATTGAGAGCTACAATACAATTGGCTATGCAAAAAAAAAGAAGAAGGTTTTGCTACGTAACTCATAGTAGCGCACACGGTTCCCATTTAAACTCCTTGCATTTATTTCAAATTCAGTGAAGAAAAGTTCGCTTCGGCTCCTTTCCTCAACACCCGTGCTCTCATTCCAGTAATTATGGTGTACAAAGATTGCATTTTAGCTTTTCTTTTAGTGCTTTGTAGTATTCAGAAATGCCTTTCACCGAGCAATGGATTAAGCAGAGCAAGCTTCCCAAAAGGGTTTGTTTTTGGAACGGCTTCTTCTGCATATCAGTATGAAGGAGCAGTAAATGAGGATGGAAGAGGGCCAACAGTATGGGATAAATATGCCCATTCCTTTGGCAAGGTAATAGATTTCAGCAATGCTGATGTTGCTGTTGATCAGTATCACAGATATGAGGAAGATGTGCAGCTCATGGCTGACATTGGAATGGATGCTTATAGGTTTTCAATAGCTTGGTCCCGTATCTTTCACAATGGGAGTGGCCAAATTAATCAAGCAGGGATTAACCATTACAACAAATTGATAAATGCACTGCTAGCCAAGGGCATCGAGCCATATGTTACACTTTTTCATTGGGACCTTCCTCAAGCCTTAGAGGACAGATACAATGGATGGCTTAGTCCCCAGATAATAAATGATTATGCAACATATGCTGAAACGTGCTTCCATGCATTTGGAGATAGGGTCAAGAACTGGATAACTTTTAATGAACCGCACACATTGGCAATCCAAGGCTATGATGTTGGACTCCAAGCCCCTGGACACTGTTCCATTCTCTTTCATCTCTTTTGTAGAGGAGGAAATTCAAGGACTGAACCTTATATTGTTGCCCACAATGTCCTCCTTTCTCATGCTGCTGCTGTCAATATTTATAAGAAAAAATACAAGACAGTGCAGCGCGGTTCAATTGGGATATCATTTGATGTTATGTGGTTTGAGCCCATGTCAAGTGCTCCAAAAGATGTAGCTGCTTCTCAAAGAGCACTGGATTTTCATTTGGGATGGTTTATGGACCCTATATTCTTTGGGGATTATCCAAACTCAATGAGAGAAAGAGTTGGAAACAGGTTGCCAACATTTACGGCTGCCAATGCGGAACTAGTCAAGGGATCCTTGGATTTTGTTGGTATTAACCACTACACTACTTATTATACCGCAGAAAATTCAACCAACATTATTAGTCGTTTTTTCAATGACACTCTTGCAGATTCTGGCACCATTAGTTTGCCCTTCAAAGGTTTTGAACCCATTGGAGAAAAGGCCTCATCCATATGGCTTTATATTGTTCCTAGAGGCATAAGAAGTCTGATGATTTATATCAAACAAAGGTATGGAAATCCACCGGTTATCATCACAGAAAATGGGATGGATGATCCGAACAGCCCATTTATCTCCATCAAGGATGCCTTGAAGGATGAGAAGAGAATCAGATATCATAATGACTATCTTGGAAACTTGTCTGCTGCCATCAAAAGTAACGGTTGCGATGTGCGCGGATATTTTGTGTGGTCTCTGCTGGATAATTGGGAATGGGCAGCAGGCTACACTTCCAGGTTTGGGCTGTACTTTGTTGATTATAAAGACAATCTCAAGAGGTACCCAAAGAATTCGGTACAATGGTTCAAAAACCTCTTAAGCTCTGCCTGAAGTGAACTTGCACACTCAACGTTACTTGCATTATTCATTATGCTGTGCTGAATACAATCTGGAGTTTGTAAGATCTTTGTGCCTGAAAAAAAAG

Network for GWHGAAEX008354

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module1

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00232.17	Glyco_hydro_1	30	502	1.40E-162

Protein Sequence

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH1

KEGG pathway

KO	Enzyme	pathway	mapID
K01188	E3.2.1.21	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Starch and sucrose metabolism	map00500
		Cyanoamino acid metabolism	map00460
		Phenylpropanoid biosynthesis	map00940

Gene Ontology

GO term	Ontology	Name
GO:0005975	Biological Process	carbohydrate metabolic process
GO:0004553	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	34.850
SRP064423	SRR2545915	Juvenile tuber	39.200
SRP108465	SRR5643513	five period of Gastrodia elata	14.380
	SRR5643514	five period of Gastrodia elata	9.470
	SRR5643515	five period of Gastrodia elata	13.950
	SRR5643524	five period of Gastrodia elata	9.090
	SRR5643525	five period of Gastrodia elata	73.850
	SRR5643528	five period of Gastrodia elata	81.090
	SRR5643658	five period of Gastrodia elata	49.130
	SRR5643659	five period of Gastrodia elata	3.040
	SRR5643660	five period of Gastrodia elata	4.750
	SRR5643661	five period of Gastrodia elata	2.660
	SRR5643662	five period of Gastrodia elata	4.480
	SRR5643663	five period of Gastrodia elata	7.580
	SRR5643664	five period of Gastrodia elata	5.290
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	6.890
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.490
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	10.840
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	11.200
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	17.060
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	20.290
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	7.710
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	20.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	6.960
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	8.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	7.310
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	7.310
SRP279888	Gastro	Gastrodia elata tuber	23.98
	Juven	Juvenile tuber	8.45
	Mother_Gastro	Mother tuber of Gastrodia elata	82.41
	Mother_Juven	Mother tuber of Juvenile	42.12