Gene detail

Detail information of GWHGAAEX008355/evm.TU.scaffold_215.26

Functional Annotation

Database	Orthologs	E value	Annotation
nr	gi\|695046569\|ref\|XP_009411119.1\|	6.97E-120	PREDICTED: uncharacterized protein LOC103992919 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|F4I2H7\|TPX2_ARATH	8.00E-18	Protein TPX2
trEMBL	tr\|I1H866\|I1H866_BRADI	2.00E-106	Uncharacterized protein {ECO:0000313\|EnsemblPlants:BRADI1G70210.1}
TAIR	AT3G01015	5.00E-79	TPX2 (targeting protein for Xklp2) protein family

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000214	738373	744285	-

Transcript Sequence
>GWHTAAEX008355 AACACTTTATAATTTACCTGCAAAATTATTTTCAAATAATATCGGCGGAGCGCCAATCCTGAACAGACCGACCGTTAAAGCCCTAAAACGTTCCCCTGCTCGCAAAGAAATTTAAAAAAATACCTCTATCGAATCCCTAATCCTCAATCCTGATCCCGTCCTCTTTAGATCTACTGCTCCGATGTCGACTCCGAAGAGAACCCCTCGCCATTCTCGCTCAAAATCAACAGATTCGTGCAAGTATTCCGAGAACTTGCAGCCTAATATCCCTATTTTGAGCCCTTCGAATAAACCCACGCCATCTAAGAAATTGGTTTGCAAATCTGCGTCGAAGCCAAGAAATCTCGCAGCGCTTTCTTCCCCGCCACCTCTGCCGCCTCGTGAGCGGAAATTTGTCAATGTCAAGAAGAAGTATTCTACTAAACAGGTGAACGATCTCGAGGGCAAGAAGCGACAAGTTGCCGCTTTCGAGAAGCTCCGTGCTTCCCAAGAAGAGTTCTTTATGAAGGACATAGTTCCTGTTCTCAAGGTCAAGGCTGAAGCATTCAATTATGAACAGGAGAAAGAAGAAGAATTGACAAAAGCTGAGAATTTGGAGAGGAAGACCAGAAGCATGTTGATGGAGGAGGCCATGAATAGTATGCCAGAGCAAGGGAATGGGAGAGTGAAGCATATTGTGAAGGCTTTTGAGTCTCTTTCAACTTCGGATTGGCCAATGCCCAACTTACATCCACTGGCTAAGAAGAGTAACGAATGCCCTTCTTTACCTGATTTTACTTTAGAGGATGAGTTGGAGCCAAGACTATGTTCTTCTTTGGATGGCCTTGATGGACGGTTCAGCTTGACTAGAAGAACATCTGGTGGGCGTCTGGGAACAAGGCGTCATAGCCTTGATTCTTCGAGGAAGAGCTGGAACACGAAACTTAAGGTAACGAGCCAGAAGCCTTTCAAGTTGAGAACTGAGCAAAGAGGGAGGCTTAAAGAGCAGAAATTTGTAAAGAAGGTGACAGAAATGTTCTTGGAGGAGAAGAGACTTCGCATACCAATTGCACAAGGTCTACCATTTACCATTGATGAGCCTGAGTGCTTGATCAAACCTCCAGTAAAGGAAAGCACTGAACCACTTGAGATTGTGCTACATAGCGATGTTCGTGCAGTTGAGCGCGCAGAATTTGATCAATATGTAATGGAGAGGCTGGAATTGGTCGAGCATTTCAGATTAGAAAGAGAGAGAATAAAAAAGATAGAAGAAGAGGATGAAATAAAGCGGCTGAGAAAGGAACTTGTGCCTAAAGCTCAACCCATGCCTTATTTTGACAGGCCATTCATCCCCAAAAAGTCCTCAAAGCCGCGGACGATCCCGAAGGAGCCGAGATTTCACATCCGACCTTTGGAAGCATCATGTGCACATATTGACCCGAGGATGCAATGATAAAGAAATAAGGCCATGTGAGCTACCTTCTTTTAGCTATAGATATAGCTAGAGAGCTCACAGACTTGAGTTCAGTCAGTTCTCTTAAATAATAGGCATGCATGAAAGTAGTTTCTTTCATAGCCATTTTGGGTGGATTCTTATTGAGAAGTAGTTGCACTCTTTACTTTGTAAAAAAATCTTTTTTATTCTAATTTTTGTGAATAGCTTTGCACCGAAGCTATGCTTTAATTTTCTTTTACAATGAAAAAACTTTCAAGTGCTTTCTGACCAAAAGAA

Network for GWHGAAEX008355

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF06886.10	TPX2	319	375	1.20E-17

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	0.460
SRP064423	SRR2545915	Juvenile tuber	0.970
SRP108465	SRR5643513	five period of Gastrodia elata	1.650
	SRR5643514	five period of Gastrodia elata	1.120
	SRR5643515	five period of Gastrodia elata	0.960
	SRR5643524	five period of Gastrodia elata	1.330
	SRR5643525	five period of Gastrodia elata	0.820
	SRR5643528	five period of Gastrodia elata	0.280
	SRR5643658	five period of Gastrodia elata	0.430
	SRR5643659	five period of Gastrodia elata	2.190
	SRR5643660	five period of Gastrodia elata	1.930
	SRR5643661	five period of Gastrodia elata	2.180
	SRR5643662	five period of Gastrodia elata	2.010
	SRR5643663	five period of Gastrodia elata	1.700
	SRR5643664	five period of Gastrodia elata	1.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	0.970
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	1.160
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	0.900
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.220
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	0.630
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	0.050
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	0.140
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	0.460
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	2.390
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	0.900
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.270
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.270
SRP279888	Gastro	Gastrodia elata tuber	1.71
	Juven	Juvenile tuber	4.53
	Mother_Gastro	Mother tuber of Gastrodia elata	3.24
	Mother_Juven	Mother tuber of Juvenile	5.03