Gene detail

Detail information of GWHGAAEX008359/evm.TU.scaffold_215.30

Functional Annotation

Database	Orthologs	E value	Annotation
KOG	KOG1721	1.00E-22	FOG: Zn-finger
nr	gi\|695041042\|ref\|XP_009408118.1\|	1.87E-31	PREDICTED: zinc finger protein ZAT9-like [Musa acuminata subsp. malaccensis]
Swissprot	tr\|Q9M202\|ZAT9_ARATH	3.00E-23	Zinc finger protein ZAT9
trEMBL	tr\|M0TCT2\|M0TCT2_MUSAM	3.00E-34	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr6P34890_001}
TAIR	AT3G60580	1.00E-22	C2H2-like zinc finger protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000214	859710	861223	+

Transcript Sequence
>GWHTAAEX008359 CGCGCACAACCTAAAGCATCTACTGAGCGCCGGCATCCTACATGGCTTGATCCCAGCCGTCCATGCATTTCGGCAGAGCTGTCAATAAATTATACGTGCAATCTTATTTTTGGCTTCTCCATTCCCCCATTTTCTCCTTCCAACCTTGCTTCCATGCATGAAATTCTCTTCAGCCCCACAAAATTACACACAGAATTAGGAATCAATATCCCTCCCTCTACTTCAAGAATTCCGAGCCATCACAACAGATCGAAAGATTGATTTTTTTTTTTTTAAGAAGCAAAGCAGATGATGAGATGAGCTACTGGTGGTCTCAATCCCAACGAAGAATCACATAAAATTCAAAACTTTGCTAAAGCAGATGGAGAAGCACTGCTGTAATGTTTGTGGAAGAAGCTTCGCAAATGGAAGATCGCTGGGGGGGCACCAGAGGTCTCATGCTCTCACAAACTACAAGAAGAAGCCAATGTGCAGATATAAACTGAGGAAGAATCCGAGGAAAACATGGCGATTGGAAGAGAAGGAGAAGGATAAGATCTGTACAAAGTGCGGGGGCATATTCAACTCTTGGACATGTTTCTTCAAGCATATGAAATGTCACTCTAAGATGAGCGGAGATGATTATGTACAAGAAGAAGAAGAAATGCAGAGCCAATCTGATAGCGATGTTACAGATTTATCAGAGGACTGCGAGAATGAGCAAAAAATGGGAGCTTTCTGCCTGTTGATGCTCTCAAGAGGCGTTTGGTCAATTACAGCAGATTCATCGGATAAGGAATCCGGTTCAGGTTCTCCAAAATTCGATCTTGATATGCATGGGAGCAAAAAGGTCCAGTCTCTTTTATGTGAATCCGAGTATTCTCACGAGCTAAAAGAGAGAAAGGCCTCTCCTGTGGGAAAGAGAAGCAGGTATGAGTGTAGAATATGCAAAAGAAGTTTTCACTCTTACCAAGCGCTTGGAGGCCACAGGGCAAACCACAAGAAGATCAAAGATGCCTCCTTTACCAAAATTCGGGAGGCTGAAGAGCTCGACATTCAGAATCATGGATCAATGTTTGAGTGCTCAATCTGTGGGAAGAATTTTGCATCAGGACAAGCTCTTGGTGGCCATAAGAGATCGCACTTTGTTGCTACAAATGCTTCTGTTTGTGCTGAATCTCATCAATCTTTTCCTTCAGAAATTCAGAGAAAACGGAAGAATTCGCTTGATCTGAACCTTCCTGCTCTTGACGATGAAATTAGCGATAATCCCAATGGAAGCATTGAACAGTGGGTCTGATGCATTGGGAACTATCTGTTCATAGCTTCTGCTTAAGTAAATTATTGTTTTATTTGGAGTGTTTATGTAGTTCAGCTTATTTGAGGTTTTCATTTAGAATAAAGATGTTCTGATTCAAGGATGGCTGCAAAGTTTGATGGAGAAACAGAAATTACTGCTGCACATCCTTGCAAACTGTTCCTATGATTGAAGATTTGCATTATTTTCTTTTAGTTGGAATTAAAATTAATTTTTT

Network for GWHGAAEX008359

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module2

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13912.5	zf-C2H2_6	4	26	1.60E-05
PF13912.5	zf-C2H2_6	183	208	2.70E-11
PF13912.5	zf-C2H2_6	232	254	4.40E-11

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	C2H2

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	1.780
SRP064423	SRR2545915	Juvenile tuber	1.120
SRP108465	SRR5643513	five period of Gastrodia elata	4.880
	SRR5643514	five period of Gastrodia elata	7.740
	SRR5643515	five period of Gastrodia elata	3.130
	SRR5643524	five period of Gastrodia elata	3.640
	SRR5643525	five period of Gastrodia elata	1.780
	SRR5643528	five period of Gastrodia elata	1.420
	SRR5643658	five period of Gastrodia elata	1.940
	SRR5643659	five period of Gastrodia elata	0.710
	SRR5643660	five period of Gastrodia elata	0.340
	SRR5643661	five period of Gastrodia elata	1.280
	SRR5643662	five period of Gastrodia elata	1.500
	SRR5643663	five period of Gastrodia elata	0.670
	SRR5643664	five period of Gastrodia elata	1.250
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	4.010
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	2.690
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	3.750
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	2.610
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	3.090
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	2.730
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	1.780
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.850
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	3.320
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	3.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	9.730
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	9.730
SRP279888	Gastro	Gastrodia elata tuber	0.93
	Juven	Juvenile tuber	1.02
	Mother_Gastro	Mother tuber of Gastrodia elata	5.10
	Mother_Juven	Mother tuber of Juvenile	1.44