Detail information of GWHGAAEX008365/evm.TU.scaffold_215.36
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|530780195|ref|YP_008432000.1| | 2.00E-16 | translation initiation factor IF-5A [Thermofilum sp. 1910b] |
| KOG | KOG3271 | 1.00E-97 | Translation initiation factor 5A (eIF-5A) |
| nr | gi|703116003|ref|XP_010101033.1| | 8.51E-105 | Eukaryotic translation initiation factor 5A-4 [Morus notabilis] |
| Swissprot | tr|P24922|IF5A2_NICPL | 2.00E-105 | Eukaryotic translation initiation factor 5A-2 |
| trEMBL | tr|W9S3D3|W9S3D3_9ROSA | 3.00E-105 | Eukaryotic translation initiation factor 5A-4 {ECO:0000313|EMBL:EXB86681.1} |
| TAIR | AT1G69410 | 1.00E-97 | eukaryotic elongation factor 5A-3 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000214 | 987688 | 992718 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008365
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01287.19 | eIF-5a | 85 | 154 | 1.90E-28 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0045905 | Biological Process | positive regulation of translational termination |
| GO:0045901 | Biological Process | positive regulation of translational elongation |
| GO:0006452 | Biological Process | translational frameshifting |
| GO:0003746 | Molecular Function | translation elongation factor activity |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0043022 | Molecular Function | ribosome binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 769.410 |
| SRR2545915 | Juvenile tuber | 730.360 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 559.890 |
| SRR5643514 | five period of Gastrodia elata | 587.430 | |
| SRR5643515 | five period of Gastrodia elata | 503.670 | |
| SRR5643524 | five period of Gastrodia elata | 567.020 | |
| SRR5643525 | five period of Gastrodia elata | 795.870 | |
| SRR5643528 | five period of Gastrodia elata | 844.670 | |
| SRR5643658 | five period of Gastrodia elata | 945.480 | |
| SRR5643659 | five period of Gastrodia elata | 601.000 | |
| SRR5643660 | five period of Gastrodia elata | 601.450 | |
| SRR5643661 | five period of Gastrodia elata | 592.540 | |
| SRR5643662 | five period of Gastrodia elata | 554.100 | |
| SRR5643663 | five period of Gastrodia elata | 621.250 | |
| SRR5643664 | five period of Gastrodia elata | 625.730 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 636.980 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 322.450 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 601.270 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 721.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 740.280 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 853.300 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 674.300 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 688.300 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 474.640 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 539.780 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 587.110 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 587.110 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 531.17 |
| Juven | Juvenile tuber | 761.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 592.89 | |
| Mother_Juven | Mother tuber of Juvenile | 820.80 |