Detail information of GWHGAAEX008368/evm.TU.scaffold_215.40
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|269127362|ref|YP_003300732.1| | 6.00E-33 | metallophosphoesterase [Thermomonospora curvata DSM 43183] |
| KOG | KOG0273 | 0 | Beta-transducin family (WD-40 repeat) protein |
| nr | gi|672115571|ref|XP_008780930.1| | 0 | PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 [Phoenix dactylifera] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 9.00E-29 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|M0TCS1|M0TCS1_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P34780_001} |
| TAIR | AT5G67320 | 0 | WD-40 repeat family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000214 | 1070305 | 1118453 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008368
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF08513.10 | LisH | 11 | 33 | 3.80E-07 |
| PF00400.31 | WD40 | 198 | 233 | 2.60E-06 |
| PF00400.31 | WD40 | 252 | 291 | 4.20E-05 |
| PF00400.31 | WD40 | 298 | 332 | 7.10E-05 |
| PF00400.31 | WD40 | 377 | 415 | 6.00E-09 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K04508 | TBL1 | MAPK signaling pathway - fly | map04013 |
| Wnt signaling pathway | map04310 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 51.040 |
| SRR2545915 | Juvenile tuber | 45.620 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 33.100 |
| SRR5643514 | five period of Gastrodia elata | 33.390 | |
| SRR5643515 | five period of Gastrodia elata | 32.020 | |
| SRR5643524 | five period of Gastrodia elata | 34.080 | |
| SRR5643525 | five period of Gastrodia elata | 39.700 | |
| SRR5643528 | five period of Gastrodia elata | 34.910 | |
| SRR5643658 | five period of Gastrodia elata | 37.880 | |
| SRR5643659 | five period of Gastrodia elata | 32.450 | |
| SRR5643660 | five period of Gastrodia elata | 36.020 | |
| SRR5643661 | five period of Gastrodia elata | 31.230 | |
| SRR5643662 | five period of Gastrodia elata | 31.750 | |
| SRR5643663 | five period of Gastrodia elata | 33.100 | |
| SRR5643664 | five period of Gastrodia elata | 34.180 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 30.070 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 27.030 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 29.770 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 34.530 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 29.040 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 31.440 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 31.970 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.160 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 29.480 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 30.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 30.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 46.17 |
| Juven | Juvenile tuber | 63.44 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 52.43 | |
| Mother_Juven | Mother tuber of Juvenile | 58.54 |