Gene detail

Detail information of GWHGAAEX008381/evm.TU.scaffold_216.18

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|108756955\|ref\|YP_631380.1\|	1.00E-129	ATP-dependent helicase HrpA [Myxococcus xanthus DK 1622]
KOG	KOG0923	0	mRNA splicing factor ATP-dependent RNA helicase
nr	gi\|743760867\|ref\|XP_010939275.1\|	0	PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [Elaeis guineensis]
Swissprot	tr\|Q38953\|DHX8_ARATH	0	Probable pre-mRNA-splicing factor ATP-dependent RNA helicase
trEMBL	tr\|J3MS81\|J3MS81_ORYBR	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:OB08G19600.1}
TAIR	AT1G32490	0	RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000211	1091099	1128900	+

Transcript Sequence
>GWHTAAEX008381 ATGGTAAATGAAGACTTCCTTAAGACTTGGGTGTCCGACAAGCTGATGTCACTTATGGGATACTCCAAAAATGTGGTTGTTCAGTATGTTATCCGACTATCCAAAGACTCTTCTTCGCCTGCAGATCTTATGGGCAAGCTAGAGGAGTTTGGGTTGTCCTCATCTAACGATACTCGTGCATTTGCTGAAGAGATATTTGTCAAAGTTCCTCACAAACAGTCTAGTTTAAGTAGTTACCGCAAAGAGGAATTAGAGGCCGCCAAATTAGCAAAGAAGCAAATGAGTTACAAGCTGCTGGATGCTGATGATGAGGATGAAAAAGATGCTCAAGTTTCTAGGAGAGATAGTTCGCATGAAGTAACAAAAGGAGGCGGTCATCAAAAACGCTTCCGAAAGAAATATGAATCTCATGGAAGTGATAGTGATGAGCATTTTGAACCCGATAATGAAAGACAAGTTCAGAGTTGCCTACCTCAGGAAGATGATCTTATGTCTGAGGAAGCTATGATCCGTGATCAAGAAGAACGTCTGCAGCTGGAGAGGAACATGAGAGAAAAAGATCAAGCAAGAACGCACAAGGTTACTGATTCAAAGCTAACAAAAGATCAGGAAGAGGAGATGATACGAAGAGCCAAAGCACTTGAAGAAAACGATATGGCTGACTTAAGAAAAACTTCAAGGCAAGTGTACTTGCAGAAAAGGAGGGACAAAAAACTTCTTGAAATAAGAGATGATATAATTGATCATGAGTATATCTTTCAAGATGTTAAGCTGACTGATGCTGAAGAGCGTGATTTGAGGAACAAGAAACAAATTTATGAGCTAGCAAAGGGGCACTTAGATGATGCTGATAAAATTGAGGAGTATAGAATGCCAGAAGCATATGATCAAGAGGGTGGTGTAAACCAAGAGAAAAGGTTTGCAGTAGCTATGCAAAGATATAGGGATTCTGGTGCTTCTGATAAAATGAATCCATTTGCCGAGCAGGAAGCATGGGAGGAACATCAAATTGGGAAGGCTACATTAAAATATGGGTCAAAGAATAAAAAGATATTGTCAGATGATTTTCAATATGTTTTTGAAGATGGAATTGATTTCATCAAGGCGTCGGTCTTGGATGGAAATCAGTTTGAAGATGAGATGTCCGAGAAACAAAAATCTTCAGAAGCAAAAACCATGTTTCAAAAGTTGCAGGAAGAAAGAAAATCTTTGCCAATATATCCTTATCGAGAGGAGCTTCTCAAGGCTATTAATGATCATCAGATACTTGTTATTGTCGGAGAAACTGGTTCTGGGAAAACTACACAAATACCACAATATCTTCATGAAGCTGGTTATACAAAGGATGAGAAGAAGGTTGGATGCACCCAGCCACGCCGCGTGGCTGCTATTAGTGTTTCAGCACGTGTCTCTCAGGAAATGGGTGTCAAGCTTGGCCATGAGGTCGGTTATTCTATCAGGTTTGAAGATTGTACCTCTGATAAAACTGTTCTAAAATATATGACGGACGGTATGTTGTTACGGGAATTCCTCAGTGAACCAGATTTGGCAAGCTATAGTGTAATTATGGTGGATGAGGCACATGAGAGGACGCTTTCAACTGATATTTTGTTTGGCTTGGTCAAGGATATTGCACGCTTCCGAAAGGATCTCAAGCTGTTAATTTCGAGTGCAACGCTTGATGCTGAGAAATTTAGCGATTTTTTTGATTCAGCTCCAATTTTCAAGATTCCGGGGCGGCGATATCCTGTTGATATACATTTTACAGTAGCTCCTGAAGCTGATTACATCGATGCTGCAATCGTCGCTGTTCTTCAAATACATGTGACACAACCTGCTGGTGATATTCTCGTCTTTCTCACCGGACAGGAGGAAATTGAAAGGGTTGATGAGATTCTGAAGTATAGAATAAGAGGATTCGGAACTAAGCTTGCAGAATTGATACTATGCCCAATCTATGCTAATCTTCCAACGGATCTTCAAGCAAAGATATTTGAGCCTACTCCAGAAGGTGCTCGTAAGGTTGTGCTGGCAACTAACATTGCTGAAACGTCTGTGACCATTGATGGAATCAAATATGTTGTTGATCCTGGATTCTGCAAGGTAAAATCATATAATCCGCGCACCGGTATGGAATCGTTGCTGGTATATCCAATCTCGAAAGCTTCAGCGACACAAAGGGCTGGGAGATCTGGGCGTACTGGGCCTGGCAAATGTTTTCGTCTCTACACTGCTTATAACTATGAGCATGATCTTGATGACAACACCGTCCCCGAAATACAGAGGAGTAACCTTGCTAATGTCGTGCTTTCTCTCATGAGCTTGGGCATTCGTGATTTGGTAAATTTTGATTTTATGGACCCCCCTCCCTCGGAGGCAGTGATCAAGGCCCTTGAACAGCTATATGCGCTTGGTGCATTGAATAAACGTGGAGAGTTGACCAAAACTGGGAGGACGATGGCAGAATTTCCACTTGATCCAATGCTTTCCAAAATGATTGTTGCTTCAGATAAATACAAGTGCTCCGATGAGATTATTTCCATTGCTGCAATGCTGTCAGTTGGGAATTCCATTTTTTATCGCCCCAAGGACAAGCAGGTTCATGCAGACAATGCTAGGAAGAATTTTCATACTGGCAATGTTGGGGATCATATAGCTTTGCTAAATGTGTATAATTCATGGAAAGAAACAAATTATTCAACGCAATGGTGTTATGAAAACTACATTCAGGTTCGCAGTATGAAACGAGCCCGAGATATTCGAGACCAGTTAGAGGGATTTTTTCATCATGCTGCCAAACTCCAAAAGTTCGGCACATACCGAACCATAAAGAATCCGCAGACAGTTCACATTCATCCGAGCTCTGGCCTGGCGCAGGAGCTTCCTCGATGGGTCATCTATCATGAACTTGTGCTTACAACAAAAGAGTTCATGCGACAGGTTACTGAGGTGAAACCGGACTGGTTGGTAGAAATTGCTCCCCACTATCATCAGTTGAAAGATGTCGAAGATTCTTCATCGAGGAAAATGCCACGTGGGCCTGGTCTAGCTGCCCCTATATGA

Network for GWHGAAEX008381

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01480.16	PWI	6	75	0.00013
PF00271.30	Helicase_C	605	735	1.30E-12
PF04408.22	HA2	797	887	2.10E-22
PF07717.15	OB_NTP_bind	926	996	1.10E-17

Protein Sequence

>GWHPAAEX008381
MVNEDFLKTWVSDKLMSLMGYSKNVVVQYVIRLSKDSSSPADLMGKLEEFGLSSSNDTRAFAEEIFVKVPHKQSSLSSYRKEELEAAKLAKKQMSYKLLDADDEDEKDAQVSRRDSSHEVTKGGGHQKRFRKKYESHGSDSDEHFEPDNERQVQSCLPQEDDLMSEEAMIRDQEERLQLERNMREKDQARTHKVTDSKLTKDQEEEMIRRAKALEENDMADLRKTSRQVYLQKRRDKKLLEIRDDIIDHEYIFQDVKLTDAEERDLRNKKQIYELAKGHLDDADKIEEYRMPEAYDQEGGVNQEKRFAVAMQRYRDSGASDKMNPFAEQEAWEEHQIGKATLKYGSKNKKILSDDFQYVFEDGIDFIKASVLDGNQFEDEMSEKQKSSEAKTMFQKLQEERKSLPIYPYREELLKAINDHQILVIVGETGSGKTTQIPQYLHEAGYTKDEKKVGCTQPRRVAAISVSARVSQEMGVKLGHEVGYSIRFEDCTSDKTVLKYMTDGMLLREFLSEPDLASYSVIMVDEAHERTLSTDILFGLVKDIARFRKDLKLLISSATLDAEKFSDFFDSAPIFKIPGRRYPVDIHFTVAPEADYIDAAIVAVLQIHVTQPAGDILVFLTGQEEIERVDEILKYRIRGFGTKLAELILCPIYANLPTDLQAKIFEPTPEGARKVVLATNIAETSVTIDGIKYVVDPGFCKVKSYNPRTGMESLLVYPISKASATQRAGRSGRTGPGKCFRLYTAYNYEHDLDDNTVPEIQRSNLANVVLSLMSLGIRDLVNFDFMDPPPSEAVIKALEQLYALGALNKRGELTKTGRTMAEFPLDPMLSKMIVASDKYKCSDEIISIAAMLSVGNSIFYRPKDKQVHADNARKNFHTGNVGDHIALLNVYNSWKETNYSTQWCYENYIQVRSMKRARDIRDQLEGFFHHAAKLQKFGTYRTIKNPQTVHIHPSSGLAQELPRWVIYHELVLTTKEFMRQVTEVKPDWLVEIAPHYHQLKDVEDSSSRKMPRGPGLAAPI

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K12813	DHX16	Spliceosome	map03040

Gene Ontology

GO term	Ontology	Name
GO:0006397	Biological Process	mRNA processing
GO:0004386	Molecular Function	helicase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	31.510
SRP064423	SRR2545915	Juvenile tuber	25.430
SRP108465	SRR5643513	five period of Gastrodia elata	20.830
	SRR5643514	five period of Gastrodia elata	22.430
	SRR5643515	five period of Gastrodia elata	21.950
	SRR5643524	five period of Gastrodia elata	22.150
	SRR5643525	five period of Gastrodia elata	22.740
	SRR5643528	five period of Gastrodia elata	15.270
	SRR5643658	five period of Gastrodia elata	17.720
	SRR5643659	five period of Gastrodia elata	23.240
	SRR5643660	five period of Gastrodia elata	25.530
	SRR5643661	five period of Gastrodia elata	24.600
	SRR5643662	five period of Gastrodia elata	23.670
	SRR5643663	five period of Gastrodia elata	28.770
	SRR5643664	five period of Gastrodia elata	25.310
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	25.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	21.060
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	25.680
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	25.380
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	33.350
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.190
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	28.390
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	30.780
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	26.190
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	29.690
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	23.860
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	23.860
SRP279888	Gastro	Gastrodia elata tuber	37.07
	Juven	Juvenile tuber	29.13
	Mother_Gastro	Mother tuber of Gastrodia elata	33.94
	Mother_Juven	Mother tuber of Juvenile	29.95