Detail information of GWHGAAEX008385/evm.TU.scaffold_217.3


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|430742523|ref|YP_007201652.1|0acetolactate synthase large subunit [Singulisphaera acidiphila DSM 18658]
KOGKOG41660Thiamine pyrophosphate-requiring enzyme
nrgi|743765566|ref|XP_010913007.1|0PREDICTED: acetolactate synthase 1, chloroplastic [Elaeis guineensis]
Swissprottr|Q6K2E8|ILVB1_ORYSJ0Acetolactate synthase 1, chloroplastic (Precursor)
trEMBLtr|U3TKA7|U3TKA7_9POAL0Acetolactate synthase {ECO:0000313|EMBL:BAN92368.1} (Fragment)
TAIRAT3G485600chlorsulfuron/imidazolinone resistant 1

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000221172125174314+
Transcript Sequence

Network for GWHGAAEX008385

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF02776.17TPP_enzyme_N682311.60E-50
PF00205.21TPP_enzyme_M2593793.40E-30
PF02775.20TPP_enzyme_C4445881.40E-34
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01652E2.2.1.6L, ilvB, ilvG, ilvI Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of antibioticsmap01130
2-Oxocarboxylic acid metabolismmap01210
Biosynthesis of amino acidsmap01230
Butanoate metabolismmap00650
C5-Branched dibasic acid metabolismmap00660
Cysteine and methionine metabolismmap00270
Pantothenate and CoA biosynthesismap00770

Gene Ontology

GO term OntologyName
GO:0009082Biological Processbranched-chain amino acid biosynthetic process
GO:0050660Molecular Functionflavin adenine dinucleotide binding
GO:0030976Molecular Functionthiamine pyrophosphate binding
GO:0003984Molecular Functionacetolactate synthase activity
GO:0000287Molecular Functionmagnesium ion binding
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms5.130
SRR2545915Juvenile tuber5.110
SRP108465SRR5643513five period of Gastrodia elata12.240
SRR5643514five period of Gastrodia elata11.090
SRR5643515five period of Gastrodia elata10.780
SRR5643524five period of Gastrodia elata10.470
SRR5643525five period of Gastrodia elata8.480
SRR5643528five period of Gastrodia elata7.500
SRR5643658five period of Gastrodia elata8.910
SRR5643659five period of Gastrodia elata11.110
SRR5643660five period of Gastrodia elata10.770
SRR5643661five period of Gastrodia elata16.050
SRR5643662five period of Gastrodia elata17.010
SRR5643663five period of Gastrodia elata14.340
SRR5643664five period of Gastrodia elata16.500
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_116.030
SRR6049655Rhizomagastrodiae_C368-T10_good_114.710
SRR6049656Rhizomagastrodiae_C368-T07_good_114.040
SRR6049657Rhizomagastrodiae_C368-T07_good_115.770
SRR6049658Rhizomagastrodiae_C368-T04_good_116.190
SRR6049659Rhizomagastrodiae_C368-T04_good_115.640
SRR6049660Rhizomagastrodiae_C368-T01_good_113.700
SRR6049661Rhizomagastrodiae_C368-T04_good_115.250
SRR6049662Rhizomagastrodiae_C368-T01_good_115.930
SRR6049663Rhizomagastrodiae_C368-T01_good_115.240
SRR6049664Rhizomagastrodiae_C368-T10_good_113.800
SRR6049665Rhizomagastrodiae_C368-T10_good_113.800
SRP279888GastroGastrodia elata tuber 13.38
JuvenJuvenile tuber10.84
Mother_GastroMother tuber of Gastrodia elata 13.20
Mother_JuvenMother tuber of Juvenile 8.14