Detail information of GWHGAAEX008393/evm.TU.scaffold_217.14


Functional Annotation

DatabaseOrthologsE valueAnnotation
nrgi|672173289|ref|XP_008806772.1|9.89E-23PREDICTED: F-box protein At1g61340-like [Phoenix dactylifera]
Swissprottr|O65416|SKI27_ARATH4.00E-11F-box protein SKIP27
trEMBLtr|M0TWZ3|M0TWZ3_MUSAM9.00E-23Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr9P02840_001}
TAIRAT4G215108.00E-11F-box family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000221666069667892+
Transcript Sequence

Network for GWHGAAEX008393

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module1

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms227.300
SRR2545915Juvenile tuber301.980
SRP108465SRR5643513five period of Gastrodia elata42.380
SRR5643514five period of Gastrodia elata31.250
SRR5643515five period of Gastrodia elata139.670
SRR5643524five period of Gastrodia elata39.290
SRR5643525five period of Gastrodia elata497.430
SRR5643528five period of Gastrodia elata445.320
SRR5643658five period of Gastrodia elata361.740
SRR5643659five period of Gastrodia elata89.410
SRR5643660five period of Gastrodia elata39.480
SRR5643661five period of Gastrodia elata82.540
SRR5643662five period of Gastrodia elata87.690
SRR5643663five period of Gastrodia elata55.810
SRR5643664five period of Gastrodia elata226.750
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1122.890
SRR6049655Rhizomagastrodiae_C368-T10_good_132.570
SRR6049656Rhizomagastrodiae_C368-T07_good_180.590
SRR6049657Rhizomagastrodiae_C368-T07_good_1104.710
SRR6049658Rhizomagastrodiae_C368-T04_good_1110.000
SRR6049659Rhizomagastrodiae_C368-T04_good_1157.560
SRR6049660Rhizomagastrodiae_C368-T01_good_1174.060
SRR6049661Rhizomagastrodiae_C368-T04_good_1102.190
SRR6049662Rhizomagastrodiae_C368-T01_good_153.750
SRR6049663Rhizomagastrodiae_C368-T01_good_1177.590
SRR6049664Rhizomagastrodiae_C368-T10_good_163.620
SRR6049665Rhizomagastrodiae_C368-T10_good_163.620
SRP279888GastroGastrodia elata tuber 55.09
JuvenJuvenile tuber13.79
Mother_GastroMother tuber of Gastrodia elata 580.62
Mother_JuvenMother tuber of Juvenile 267.86