Detail information of GWHGAAEX008399/evm.TU.scaffold_217.21


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG30882.00E-155Secretory carrier membrane protein
nrgi|743761878|ref|XP_010905287.1|0PREDICTED: secretory carrier-associated membrane protein 2-like [Elaeis guineensis]
Swissprottr|A2YMP7|SCAM1_ORYSI1.00E-169Putative secretory carrier-associated membrane protein 1
trEMBLtr|B3TLU6|B3TLU6_ELAGV0Secretory carrier membrane protein {ECO:0000313|EMBL:ACF06527.1}
TAIRAT1G612502.00E-155secretory carrier 3

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002219645711014425+
Transcript Sequence

Network for GWHGAAEX008399

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04144.12SCAMP1202908.90E-51
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0015031Biological Processprotein transport
GO:0016021Cellular Componentintegral component of membrane

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms11.850
SRR2545915Juvenile tuber23.070
SRP108465SRR5643513five period of Gastrodia elata35.230
SRR5643514five period of Gastrodia elata47.500
SRR5643515five period of Gastrodia elata38.800
SRR5643524five period of Gastrodia elata39.950
SRR5643525five period of Gastrodia elata27.660
SRR5643528five period of Gastrodia elata30.100
SRR5643658five period of Gastrodia elata28.720
SRR5643659five period of Gastrodia elata30.320
SRR5643660five period of Gastrodia elata30.110
SRR5643661five period of Gastrodia elata37.420
SRR5643662five period of Gastrodia elata45.250
SRR5643663five period of Gastrodia elata37.810
SRR5643664five period of Gastrodia elata39.400
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_126.730
SRR6049655Rhizomagastrodiae_C368-T10_good_138.590
SRR6049656Rhizomagastrodiae_C368-T07_good_126.130
SRR6049657Rhizomagastrodiae_C368-T07_good_117.930
SRR6049658Rhizomagastrodiae_C368-T04_good_114.440
SRR6049659Rhizomagastrodiae_C368-T04_good_111.500
SRR6049660Rhizomagastrodiae_C368-T01_good_116.710
SRR6049661Rhizomagastrodiae_C368-T04_good_117.300
SRR6049662Rhizomagastrodiae_C368-T01_good_136.290
SRR6049663Rhizomagastrodiae_C368-T01_good_125.080
SRR6049664Rhizomagastrodiae_C368-T10_good_145.340
SRR6049665Rhizomagastrodiae_C368-T10_good_145.340
SRP279888GastroGastrodia elata tuber 28.40
JuvenJuvenile tuber17.59
Mother_GastroMother tuber of Gastrodia elata 25.41
Mother_JuvenMother tuber of Juvenile 20.52