Detail information of GWHGAAEX008402/evm.TU.scaffold_217.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|292655267|ref|YP_003535164.1|6.00E-11SRP19 protein [Haloferax volcanii DS2]
KOGKOG31985.00E-58Signal recognition particle, subunit Srp19
nrgi|643716219|gb|KDP27992.1|7.29E-72hypothetical protein JCGZ_19072 [Jatropha curcas]
Swissprottr|Q943Z6|SRP19_ARATH2.00E-58Signal recognition particle 19 kDa protein
trEMBLtr|A0A067JVS4|A0A067JVS4_JATCU3.00E-72Uncharacterized protein {ECO:0000313|EMBL:KDP27992.1}
TAIRAT1G481605.00E-58signal recognition particle 19 kDa protein, putative / SRP19, putative

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000022111070171124211-
Transcript Sequence

Network for GWHGAAEX008402

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01922.16SRP19141082.10E-32
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03105SRP19 Protein export map03060

Gene Ontology

GO term OntologyName
GO:0006614Biological ProcessSRP-dependent cotranslational protein targeting to membrane
GO:0008312Molecular Function7S RNA binding
GO:0048500Cellular Componentsignal recognition particle

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms39.430
SRR2545915Juvenile tuber41.080
SRP108465SRR5643513five period of Gastrodia elata40.050
SRR5643514five period of Gastrodia elata46.800
SRR5643515five period of Gastrodia elata39.390
SRR5643524five period of Gastrodia elata46.260
SRR5643525five period of Gastrodia elata48.600
SRR5643528five period of Gastrodia elata63.590
SRR5643658five period of Gastrodia elata50.790
SRR5643659five period of Gastrodia elata35.140
SRR5643660five period of Gastrodia elata40.170
SRR5643661five period of Gastrodia elata39.900
SRR5643662five period of Gastrodia elata38.060
SRR5643663five period of Gastrodia elata43.970
SRR5643664five period of Gastrodia elata34.770
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_137.600
SRR6049655Rhizomagastrodiae_C368-T10_good_136.720
SRR6049656Rhizomagastrodiae_C368-T07_good_159.360
SRR6049657Rhizomagastrodiae_C368-T07_good_141.640
SRR6049658Rhizomagastrodiae_C368-T04_good_142.280
SRR6049659Rhizomagastrodiae_C368-T04_good_147.830
SRR6049660Rhizomagastrodiae_C368-T01_good_155.630
SRR6049661Rhizomagastrodiae_C368-T04_good_145.600
SRR6049662Rhizomagastrodiae_C368-T01_good_145.380
SRR6049663Rhizomagastrodiae_C368-T01_good_145.040
SRR6049664Rhizomagastrodiae_C368-T10_good_153.540
SRR6049665Rhizomagastrodiae_C368-T10_good_153.540
SRP279888GastroGastrodia elata tuber 58.76
JuvenJuvenile tuber79.32
Mother_GastroMother tuber of Gastrodia elata 82.53
Mother_JuvenMother tuber of Juvenile 62.94