Gene detail

Detail information of GWHGAAEX008405/evm.TU.scaffold_218.2

Functional Annotation

Database	Orthologs	Annotation
COG	gi\|428204016\|ref\|YP_007082605.1\|	carbamoyl-phosphate synthase large subunit [Pleurocapsa sp. PCC 7327]
KOG	KOG0370	Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase)
nr	gi\|672192991\|ref\|XP_008775915.1\|	PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic-like [Phoenix dactylifera]
Swissprot	tr\|Q42601\|CARB_ARATH	Carbamoyl-phosphate synthase large chain, chloroplastic (Precursor)
trEMBL	tr\|A0A061F7Y0\|A0A061F7Y0_THECC	Carbamoyl phosphate synthetase B {ECO:0000313\|EMBL:EOY13131.1}
TAIR	AT1G29900	carbamoyl phosphate synthetase B

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000213	198496	203079	+

Transcript Sequence
>GWHTAAEX008405 GCTAAGTCATTTTCAGGCCACCCATTCTTTCAGAAAAACCCTAAATTCATCGGCGCGAAAGAAAAAACGTAGTCGGCGAAAGTGCGAAGCCACACTCGCCTGTCATGGCTTTCTGCAATATTCATCAGTCGATCCGCTCCTTTCCCTCATCTTCTTCGTCCTCATCACCTGCCTCCTTTCCTCCTTCGCTTCACGTCTCATCACTGCTCTTCCCCCGCCTCTCACCTGCGTCAGTTGCATCATCTGTGAATCATCGCCGCCCTCTCCTCCTCCCTCGCGCGCATGACCGAAGTTCCGATACTTCTTCGCCTCTTCCGCGCTCCGGAAAGCGCGAGGACATCCACAAGATCATGATTCTAGGCGCCGGTCCTATCGTCATCGGCCAGGCTTGCGAATTTGATTATTCGGGCACTCAGGCCTGCAAAGTCCTGCGCGACGAGGGCTATGAGGTCGTCCTCGTCAACTCGAATCCGGCCACCATCATGACAGATCCGGGGCTTGCCGATCGCACCTACGTAGGCCCCATGACTCCCGAGCTTGTCGAGCAGATCATCGCCCAGGAACGCCCGCACGCCCTTCTTCCCACAATGGGCGGCCAGACCGCCCTCAATCTTGCAGTGGCTCTCCACGAATCTGGCGCCCTCGCCCGCTATTCCGTCGAGCTCATAGGCGCAAAGCTTGACGCCATACGCTGCGCGGAGGACCGTGATCTATTCAAGAAAGCCATGGCGTCCATTGGCCTGAAGACCCCGCCTTCAGGCATCGCCACGACTGTCGAGGAGTGCTCCTCCATCGCCGACGACATCGGCGGATTTCCTCTAATCATTCGCCCCGCGTTCACGCTGGGCGGCACTGGAGGCGGCATCGCTTACAACCGCGACGAATTCGAATCCATCTGTCGCGCTGGGCTGACTGCCAGCCTGACTTCTCAGGTTCTCATTGAAAAATCTCTGCTTGGATGGAAGGAATACGAACTTGAGGTCATGCGCGATCTTGCGGACAACGTCGTCATCATTTGCTCGATCGAGAACGTCGATCCCATGGGCGTGCACACCGGCGACTCCATTACCGTCGCTCCTGCGCAGACCCTCACCGATAAGGAGTATCAGAGGTTGAGGGATTACTCTGTGGCTATAATTCGAAAGATTGGCGTTGAATGTGGCGGATCGAACGTGCAGTTTGCTGTGAATCCTTTGGATGGGGAGGTGATGGTGATTGAGATGAATCCGAGGGTTTCTAGGTCATCGGCTCTTGCATCTAAGGCTACTGGGTTTCCAATTGCTAAGATGGCTGCCAAGCTTTCGGTTGGTTATACTCTTGATCAGATACCCAATGATATCACGAAGAAGACGCCTGCTAGCTTTGAGCCCTCTATTGATTATGTGGTGACAAAGATTCCGCGATTTGCCTTCGAGAAATTCCCCGGATCTCAGCCGATCCTGACGACCCAGATGAAATCCGTAGGCGAGGCCATGGCATTGGGAAGGACCTTCCAAGAATCCTTCCAAAAGGCGGTCCGGTCTTTGGAATGCGGCTACTCCGGCTGGGGCTGTGCAGAAATCAAAGAACATCACTGGGACTGGGAGCAGCTGAAGTATAGTCTTCGAGTCCCCAACCCGGACCGCATTCATGCCATATATGCTGCCATGAAGAAAGGCATGGGGGTGGAAGAAATACACGAACTCAGCCTCATTGACAAGTGGTTCCTTTCCCAGCTCAGAGAATTGGTTCAAGTCGAAAATTTTCTTCAGACAACAAGTTTAGACCGACTGTCGAAGGACGACATGTATGAAGTGAAGAGGAGGGGGTTCAGCGACAAACAGATCGCATACGCTACTAATTCGACCGAGAGGGAGGTGAGAGCACGGCGAGTCTCTTTCGGCGTGATCCCGGCATATAAGAGGGTTGATACCTGCGCTGCCGAGTTCGAGGCTAACACGCCTTACATGTACTCGTCTTATGATTTCGAGTGTGAATCAGCTCCTACTCCAGCGAAGAAGGTTTTGATCTTGGGTGGCGGCCCAAACCGGATTGGTCAGGGAATAGAATTTGATTACTGCTGCTGCCATGCAGCCTTTGCTCTTCAACAGGATGGATTTGAAACAATCATGATGAACTCAAATCCGGAGACAGTGTCTACTGATTACGACACAAGCGATCGCTTGTACTTCGAGCCGTTGACGGTGGAGGATGTGGCCAATGTTCTAGAGGTAGAACGGCCTGACGGCATAATCGTGCAGTTTGGGGGGCAGACTCCCCTGAAGCTCGCCATCCCCATACAGCACTACCTGAAAGAGAGAAAACTGATGTCCGCCAGCGGGGCCGGGCCGGTAAAAGTGTGGGGCACATCGCCGGATTCCATTGATGCCGCTGAGGACCGAGAAAAATTTAATGCGATCCTGAATGAGCTTCAGATAGAGCAGCCCAGAGGCGGGATAGCAAAGAGCGCGGGCGACGCCCTGTCCATAGCTTCCGATATAGGGTACCCTGTTGTCGTCCGGCCTTCCTATGTCTTGGGCGGAAGGGCCATGGAAATTGTGTATACTGATGAGAATCTTGTCAAGTATCTTGAGACCGCCGTCGAAGTCGATCCCGGCCGCCCTGTCCTTGTTGACAAGTACCTTCGGGATGCAGTTGAAATCGATGTGGATGCCCTCGCAGATTCCCAGGGGAATGTTGTGATCGGCGGCATAATGGAGCATATAGAGCAGGCCGGAATCCATTCCGGCGACTCAGCTTGCTCCCTTCCGACCAGAACCATATCGAAGAAATGCTTGGGCGTAATCCGTTCGTGGACGGCTAAACTCGCGAAAAGGCTAGGCGTATGCGGCCTCATGAACTGCCAGTACGCCATCACCGCCTCCGGCGACGTGTACATCCTTGAGGCTAACCCCCGTGCTTCCCGCACGGTTCCCTTTGTCTCTAAAGCCATCGGCCACCCGCTCGCAAAATACGCGGCTCTCGTGATGTCTGGGAAGAGCCTGCAGGACATCGGATTCACCAGCGAGGTGATCCCGAAGCACGTTTCAATCAAGGAGGCCGTCCTTCCGTTCGAGAAATTCCAAGGCTGCGACGTGCTGCTCGGGCCAGAGATGCGCAGCACAGGAGAAGTCATGGGGATCGATTCCGACTTCCACGTCGCGTTTGCGAAGGCGCAAATTGCCGCCGGGCAAAAGCTTCCCACGGAGGAGAACTGTCCGGGCGGTGGCAAGAGGACGGCGTTCCTCAGCTTCAATGACCTGACAAAGCCCCACTTGGCGTTGATCGCCGACAGATTCCTGGCACTGGGTTTCAGGCTGGTTGCGACCTCAGGGACGGCTCGGGTTCTGGAGCTGGAGAAGAAGCCAGTGGAGCGCATTCTGAAGATGCATGAGGGAAGGCCGCACGCTGGCGACATGCTGGCTAATGGCGAGATACAGGTCATGGTAATAACCAGCTCCGGCGATGCTTTGGATTCGATAGACGGGAGGCAGCTGAGGAGAATGGCTCTGGCCTGCAAGATCCCGGTAATAACAACGGTCGCCGGAGCGCTGGCCACTGTGGAAGCGCTGAGGAGCCTGAAGCATGATAGCTCCATCAAAATGCTGGCATTGCAGGACTATTTTCCTCCGGTCGAAGAACGGCACAATTTGCCGGCAGCGTCCTCTGCTGTTTAGCTGCTTGCTTTTGACTCTGGCAAAATTAATTCGACCGTTGGCTTCAAGCTGCTTGAGCGGGTATTTATTTTTTGATCTGTTTTAATAACGTTATTCGGGATTAATCAATCATGTGTAAAATTTAGGCTGTTGTATCTCCAAATTTTGCTAATAAATTACTTGCTTTTTCCCATCATTTCTGTTTATTTGTTAGTTTCTACAAAGTGATTAAAAATCTTTATCAGTGGTGCTAATGACTTTTTTTTTGCGAGC

Network for GWHGAAEX008405

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02786.16	CPSase_L_D2	200	407	9.10E-70
PF02787.18	CPSase_L_D3	500	619	1.40E-41
PF02786.16	CPSase_L_D2	758	961	2.20E-38
PF02142.21	MGS	1054	1137	1.80E-14

Protein Sequence

>GWHPAAEX008405
MAFCNIHQSIRSFPSSSSSSSPASFPPSLHVSSLLFPRLSPASVASSVNHRRPLLLPRAHDRSSDTSSPLPRSGKREDIHKIMILGAGPIVIGQACEFDYSGTQACKVLRDEGYEVVLVNSNPATIMTDPGLADRTYVGPMTPELVEQIIAQERPHALLPTMGGQTALNLAVALHESGALARYSVELIGAKLDAIRCAEDRDLFKKAMASIGLKTPPSGIATTVEECSSIADDIGGFPLIIRPAFTLGGTGGGIAYNRDEFESICRAGLTASLTSQVLIEKSLLGWKEYELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQRLRDYSVAIIRKIGVECGGSNVQFAVNPLDGEVMVIEMNPRVSRSSALASKATGFPIAKMAAKLSVGYTLDQIPNDITKKTPASFEPSIDYVVTKIPRFAFEKFPGSQPILTTQMKSVGEAMALGRTFQESFQKAVRSLECGYSGWGCAEIKEHHWDWEQLKYSLRVPNPDRIHAIYAAMKKGMGVEEIHELSLIDKWFLSQLRELVQVENFLQTTSLDRLSKDDMYEVKRRGFSDKQIAYATNSTEREVRARRVSFGVIPAYKRVDTCAAEFEANTPYMYSSYDFECESAPTPAKKVLILGGGPNRIGQGIEFDYCCCHAAFALQQDGFETIMMNSNPETVSTDYDTSDRLYFEPLTVEDVANVLEVERPDGIIVQFGGQTPLKLAIPIQHYLKERKLMSASGAGPVKVWGTSPDSIDAAEDREKFNAILNELQIEQPRGGIAKSAGDALSIASDIGYPVVVRPSYVLGGRAMEIVYTDENLVKYLETAVEVDPGRPVLVDKYLRDAVEIDVDALADSQGNVVIGGIMEHIEQAGIHSGDSACSLPTRTISKKCLGVIRSWTAKLAKRLGVCGLMNCQYAITASGDVYILEANPRASRTVPFVSKAIGHPLAKYAALVMSGKSLQDIGFTSEVIPKHVSIKEAVLPFEKFQGCDVLLGPEMRSTGEVMGIDSDFHVAFAKAQIAAGQKLPTEENCPGGGKRTAFLSFNDLTKPHLALIADRFLALGFRLVATSGTARVLELEKKPVERILKMHEGRPHAGDMLANGEIQVMVITSSGDALDSIDGRQLRRMALACKIPVITTVAGALATVEALRSLKHDSSIKMLALQDYFPPVEERHNLPAASSAV

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01955	carB, CPA2	Metabolic pathways	map01100
K01955	carB, CPA2	Pyrimidine metabolism	map00240

Gene Ontology

GO term	Ontology	Name
GO:0006807	Biological Process	nitrogen compound metabolic process
GO:0005524	Molecular Function	ATP binding
GO:0046872	Molecular Function	metal ion binding

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	7.590
SRP064423	SRR2545915	Juvenile tuber	7.040
SRP108465	SRR5643513	five period of Gastrodia elata	12.330
	SRR5643514	five period of Gastrodia elata	13.030
	SRR5643515	five period of Gastrodia elata	10.420
	SRR5643524	five period of Gastrodia elata	11.450
	SRR5643525	five period of Gastrodia elata	10.630
	SRR5643528	five period of Gastrodia elata	10.010
	SRR5643658	five period of Gastrodia elata	9.220
	SRR5643659	five period of Gastrodia elata	16.520
	SRR5643660	five period of Gastrodia elata	17.390
	SRR5643661	five period of Gastrodia elata	17.120
	SRR5643662	five period of Gastrodia elata	16.360
	SRR5643663	five period of Gastrodia elata	15.900
	SRR5643664	five period of Gastrodia elata	14.400
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	16.290
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	14.680
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	17.320
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	14.700
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.110
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	15.400
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	16.300
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	16.010
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.860
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	17.440
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	18.890
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	18.890
SRP279888	Gastro	Gastrodia elata tuber	17.05
	Juven	Juvenile tuber	13.95
	Mother_Gastro	Mother tuber of Gastrodia elata	12.54
	Mother_Juven	Mother tuber of Juvenile	13.76