Detail information of GWHGAAEX008406/evm.TU.scaffold_218.3
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3818 | 4.00E-98 | DNA polymerase epsilon, subunit B |
| nr | gi|743773836|ref|XP_010917272.1| | 0 | PREDICTED: DNA polymerase epsilon subunit 2 isoform X1 [Elaeis guineensis] |
| trEMBL | tr|M0SCN8|M0SCN8_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P07710_001} |
| TAIR | HS4505935 | 4.00E-98 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000213 | 203970 | 220791 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008406
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04042.15 | DNA_pol_E_B | 286 | 491 | 4.10E-46 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02325 | POLE2 | DNA replication | map03030 |
| Base excision repair | map03410 | ||
| Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006261 | Biological Process | DNA-dependent DNA replication |
| GO:0006260 | Biological Process | DNA replication |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003887 | Molecular Function | DNA-directed DNA polymerase activity |
| GO:0008622 | Cellular Component | epsilon DNA polymerase complex |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 21.370 |
| SRR2545915 | Juvenile tuber | 36.970 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 29.500 |
| SRR5643514 | five period of Gastrodia elata | 33.860 | |
| SRR5643515 | five period of Gastrodia elata | 28.390 | |
| SRR5643524 | five period of Gastrodia elata | 29.500 | |
| SRR5643525 | five period of Gastrodia elata | 50.560 | |
| SRR5643528 | five period of Gastrodia elata | 27.100 | |
| SRR5643658 | five period of Gastrodia elata | 44.970 | |
| SRR5643659 | five period of Gastrodia elata | 34.410 | |
| SRR5643660 | five period of Gastrodia elata | 35.820 | |
| SRR5643661 | five period of Gastrodia elata | 34.100 | |
| SRR5643662 | five period of Gastrodia elata | 33.060 | |
| SRR5643663 | five period of Gastrodia elata | 34.490 | |
| SRR5643664 | five period of Gastrodia elata | 31.860 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 29.470 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 31.640 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 32.640 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 27.510 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 32.760 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 29.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 30.950 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 30.170 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 31.040 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 32.850 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 32.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 32.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 76.29 |
| Juven | Juvenile tuber | 51.39 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 43.66 | |
| Mother_Juven | Mother tuber of Juvenile | 34.45 |