Detail information of GWHGAAEX008407/evm.TU.scaffold_218.4
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|108760510|ref|YP_632759.1| | 2.00E-17 | serine/threonine-protein kinase PKN1 [Myxococcus xanthus DK 1622] |
| KOG | KOG1164 | 0 | Casein kinase (serine/threonine/tyrosine protein kinase) |
| nr | gi|573913825|ref|XP_006644591.1| | 0 | PREDICTED: casein kinase I isoform delta-like isoform X1 [Oryza brachyantha] |
| Swissprot | tr|P42158|KC1D_ARATH | 0 | Casein kinase I isoform delta-like |
| trEMBL | tr|J3L3D0|J3L3D0_ORYBR | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:OB01G37360.1} |
| TAIR | AT1G72710 | 0 | casein kinase 1-like protein 2 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000213 | 223328 | 241057 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008407
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00069.24 | Pkinase | 13 | 230 | 4.80E-27 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | CK1_CK1 |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02218 | CSNK1, CKI | MAPK signaling pathway - yeast | map04011 |
| Hippo signaling pathway - multiple species | map04392 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006468 | Biological Process | protein phosphorylation |
| GO:0004672 | Molecular Function | protein kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 100.310 |
| SRR2545915 | Juvenile tuber | 73.170 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 69.470 |
| SRR5643514 | five period of Gastrodia elata | 64.520 | |
| SRR5643515 | five period of Gastrodia elata | 69.920 | |
| SRR5643524 | five period of Gastrodia elata | 68.210 | |
| SRR5643525 | five period of Gastrodia elata | 101.140 | |
| SRR5643528 | five period of Gastrodia elata | 88.150 | |
| SRR5643658 | five period of Gastrodia elata | 109.020 | |
| SRR5643659 | five period of Gastrodia elata | 64.890 | |
| SRR5643660 | five period of Gastrodia elata | 66.480 | |
| SRR5643661 | five period of Gastrodia elata | 64.550 | |
| SRR5643662 | five period of Gastrodia elata | 65.230 | |
| SRR5643663 | five period of Gastrodia elata | 64.490 | |
| SRR5643664 | five period of Gastrodia elata | 62.910 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 73.960 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 60.340 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 62.850 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 89.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 72.260 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 83.920 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 73.460 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 69.080 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 59.160 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 61.380 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 66.840 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 66.840 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 77.19 |
| Juven | Juvenile tuber | 137.65 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 101.78 | |
| Mother_Juven | Mother tuber of Juvenile | 133.20 |