Gene detail

Detail information of GWHGAAEX008408/evm.TU.scaffold_218.5

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|385331604\|ref\|YP_005885555.1\|	2.00E-94	RNA helicase, ATP-dependent DEAH box, HrpA type [Marinobacter adhaerens HP15]
KOG	KOG0920	0	ATP-dependent RNA helicase A
nr	gi\|695013615\|ref\|XP_009393597.1\|	0	PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Musa acuminata subsp. malaccensis]
Swissprot	tr\|P0CE10\|Y4102_ARATH	2.00E-67	Putative uncharacterized protein At4g01020, chloroplastic (Precursor)
trEMBL	tr\|B9EZ83\|B9EZ83_ORYSJ	0	Fructose-bisphosphate aldolase {ECO:0000256\|RuleBase:RU003994}
TAIR	AT1G48650	0	DEA(D/H)-box RNA helicase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000213	242121	309356	-

Transcript Sequence
>GWHTAAEX008408 ATGCCCGGTGCTTTTTTCATTCGTATTTGCCTCCGGATGCGCGCTCAGATGACTTCAACTCTTGGGTCACCCTCTACTCTGCCCGCGCCTTTTTTCTCCCGAAACCATCCAAACCATAATCTATTTGTTTCCTGTGCAAAGCCAATGAAAGCTGGGTTTTTTGTGCCGCCAGTTCATCGGCTGCGGTCGGTTATAGCCTCCGCGAATGGGACCGTTGTCATAAACTCGAACTCAGTCAAGCACGATTGGCGTGATTCGCTTCGTCCTTCCTTATCTCTTGAAACTGACGGATTTCCCTATAACGGGCAGCAGTGCTCACACTACACTAAGTATGCTTACGATGATTATTCAGAAGATGAGTCCGATCGGGACTATGATATGCCTTCAAATTCTGACAAGGGAAATTCTAGTTTAGATAATGCTAATGAGTGGAAATGGAAGTTTAGTATGCTACTCCGTAATGAATCTGAGCAAGAGTTGGTATCAAGGGAAAGAAAAGATAGGCGTGATTATGAGCATATTGCAGCTATTGCGGAAAGAATGGGACTACATAGCCGTCAATATGCAAAGGTGGTTGTCTTTAGCAAGCTGCCATTGCCTAATTACCGGCCTGATCTTGATGAAAAGCGACCCCAAAGAGAGGTGAATATTCCTATTGGTCTGCAAAGGGAAGTGGATTCTCTGCTTACGGACTATCTTACTCGAAAGAGAGCTAATCCCGAAAGTTTTCCAAGTATTTCCTTTTCAAGGTCAAGCAGCACTGATAGCTTTGCTACTGGTGATGGCTTTCTTGAGCAGCCCAATACTCAAGCTTCCCCCTCAATTGTGTTAGAAAAAATGCAAAGGCGGAGGAGCTTACAGCTACGAAATCAGCAAGCTGCTTGGCAGGAATCTCCAGAGGGTCAAATCATGCTTGAATTCCGTAAAAGTCTCCCATCTTACAAAGAGAAAGAGGCGCTGTTGGAGGCTATTTCTCGAAGTCAGGTGTTGGTCATTTCAGGTGAGACAGGCTGTGGTAAGACAACGCAGTTACCTCAGTATATTCTAGAATCCGAGATTGATGGTGCTCGAGGTGCAACCTGCAGTATTATTTGCACTCAACCTAGGAGGATATCTGCCATGGCTGTATCTGAAAGAGTTGCAGCTGAAAGAGGGGAAAATTTGGGTGAATCAGTTGGTTATAAGGTTCGCCTAGAAGGTATTAAAGGGAGAGATACTCGCCTTCTTTTCTGCACGACAGGAATTTTGTTGAGAAGATTGCTTGTCGATAGAAATTTAAAAGGTGTTACCCATGTTATTGTAGATGAGATTCATGAACGTGGAATGAATGAAGATTTTCTCCTGGTTGTCTTGAAAGACCTGCTGCCTCGTAGGCCAGAGCTCAAGTTGATTTTGATGAGTGCAACTTTGAATGCTGAACTTTTCTCTTCTTACTTCTCAGGGGCTCCCATGATGCATATACCTGGGTTTACATATCCTGTTCGTACACAATTTTTGGAGAATATTCTTGAAATTACTGGACACAAGCTTACTCCTTACAATCAAATTGATGATTATGGACAAGAAAAAAGCTGGAAAATGCAAAGACAAGTTCTTAGGAAAAGGAAGAGCCAAATTGCTTCAGCCGTTGAAGATGCACTTGAAGCAGCTGACTTTAGAGATTACAGTTCTAGAACTCGTGAGTCATTGGCTTGCTGGAACCCTGATTCTATAGGCTTCAATCTTATAGAGAGTCTCTTAGTTCACATATGTCGAAAGGAAAGGCCGGGCGCTATTTTAGTTTTTATGACTGGATGGGATGCCATTAATTCACTCAAAGAACAACTGCAAGCTCATCCACTACTTGGAGATCCTCTCAAAGTTTTAATTCTCCCATGTCATGGATCCATGACCAGCTCTGAGCAGAGATTAATATTTGATAAGCCACTAAATGGAGTGAGGAAAATAGTTCTTTCTACAAACATTGCTGAGACAAGTATCACCATTAATGATGTTGTTTTTGTTGTTGATTGTGGGAAGGCAAAAGAAACGTCGTATGATGCATTAAACAATACCCCTTGTTTACTTCCAACATGGATTTCAAAAGCTTCTGCTAGACAGAGAAGAGGAAGAGCTGGTCGTGTGCAGCCTGGGGAGTGTTACCGTCTGTATCCAAGATGCGTGTATGAGGTTTTTGCAGATTATCAATTACCAGAACTTCTAAGAACGCCTTTACAGTCTCTTTGTTTGCAAATCAAAAGCTTGAGGCTTGGAAGCATATCAGAGTTTTTATCAAGGGCATTGCAATCTCCAGAAACCTTATCTGTTCAAAATGCCATCGAATATCTAAAGGTTATTGGTGCGTTAGATGAGAAACAGGAATTAACTATTCTAGGAAGACATTTGGCTATGCTTCCAGTTGAACCAAAGCTTGGGAAGATGCTTATTTTTGGGGCTATTTTCAAATGTCTTGATCCTATATTGACTGTTGTTGCCGGTTTAAGTGCTAGAGATCCTTTTCTAACTCCATTTGACAAGAAAGATCTTGCAGATAGCGCAAAATCTCAGTTTTCTTGCAGGGATTACAGCGATCATCTTGCACTTATTCGGGCATATGAAGGTTGGAAAGAAGCTGAAATGCATCGTTCTGGATATGACTATTGCTGGAAGAATTTTCTTTCTGCTCAAACTTTGAAGGCAATTGAATCTCTTAAAAAACAGTTCCATTTTCTGCTTAAGGATACCGGCCTTGTTGATGAGAATTTAACTACATATAATATTTGGTGTCGTGATGAGAATCTTGTCCGAGCAGTTATCTGTGCTGGTCTGTTTCCTGGAATTTGTTCTGTAGTGAACAAGGAGAGATCCATAGCACTGAAGACTATGGAAGATGGACAAGTCATGCTTTATGCTAGCTCTGTCAATGGAAAGGAGGCTAGGATTCCTTACCCGTGGTTGGTTTTTAATGAGAAAGTAAAGGTGAATTCCGTATTCCTCAGGGACTCAACTGCAGTATCTGATTCGATGTTGCTTCTATTTGGAGGGAGCATTTGCAGGGGCGGACTTGATGGACACTTAAAAATGTTAGGTGGCTATCTTGAATTTTTCATGAAGCCAGATTTGGCATATACCTATGTAACTCTTAAGAAAGAGATGGAGGAGCTGGTTCTAAACAAGCTTCAAAACCCTAGAATGGAGATACAGCAAGCTGGAGAGGAGCTGCTGCAAGCGGTTCGCTTGCTGGTTGCCGAGGATCCGTGCGGCGGGCAGTTCGTGTTCGGGCGGCAGGAGCTGAAGCCGAAGAAGGAGAAATTTCTGGGCTCGGGCGGAGGGGATAATCTTAAGGGCCAGCTGCAGACGCTGCTGTCGAGGGCCGGGCACGACAATCCGACATACAAGACGAAGCAGCTGAGGAGCAACAGCAATCTCTTCAGGGCGATGGTGGAGTTCAACGGGATGCAATTCATCAGCGAGCCTTGCGGAAGCAAGAAGCAAGCCGAGATGAGCGCTGCTTCCGAGGCGCTCGACTGGCTGATAGGCGGCGGCGAAGCTGCTTCCGCCTCCTCGCCCTCCCGCGACTTCGATCACATGTCCATGGCGATTAAGAAGACCAAGAAACATCATCATCATCATAGGAGAACATGA

Network for GWHGAAEX008408

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00270.28	DEAD	321	472	1.00E-07
PF00271.30	Helicase_C	578	708	9.00E-16
PF04408.22	HA2	772	861	1.90E-20
PF07717.15	OB_NTP_bind	928	1010	6.40E-17
PF00035.25	dsrm	1108	1171	9.70E-09

Protein Sequence

>GWHPAAEX008408
MPGAFFIRICLRMRAQMTSTLGSPSTLPAPFFSRNHPNHNLFVSCAKPMKAGFFVPPVHRLRSVIASANGTVVINSNSVKHDWRDSLRPSLSLETDGFPYNGQQCSHYTKYAYDDYSEDESDRDYDMPSNSDKGNSSLDNANEWKWKFSMLLRNESEQELVSRERKDRRDYEHIAAIAERMGLHSRQYAKVVVFSKLPLPNYRPDLDEKRPQREVNIPIGLQREVDSLLTDYLTRKRANPESFPSISFSRSSSTDSFATGDGFLEQPNTQASPSIVLEKMQRRRSLQLRNQQAAWQESPEGQIMLEFRKSLPSYKEKEALLEAISRSQVLVISGETGCGKTTQLPQYILESEIDGARGATCSIICTQPRRISAMAVSERVAAERGENLGESVGYKVRLEGIKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGMNEDFLLVVLKDLLPRRPELKLILMSATLNAELFSSYFSGAPMMHIPGFTYPVRTQFLENILEITGHKLTPYNQIDDYGQEKSWKMQRQVLRKRKSQIASAVEDALEAADFRDYSSRTRESLACWNPDSIGFNLIESLLVHICRKERPGAILVFMTGWDAINSLKEQLQAHPLLGDPLKVLILPCHGSMTSSEQRLIFDKPLNGVRKIVLSTNIAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPTWISKASARQRRGRAGRVQPGECYRLYPRCVYEVFADYQLPELLRTPLQSLCLQIKSLRLGSISEFLSRALQSPETLSVQNAIEYLKVIGALDEKQELTILGRHLAMLPVEPKLGKMLIFGAIFKCLDPILTVVAGLSARDPFLTPFDKKDLADSAKSQFSCRDYSDHLALIRAYEGWKEAEMHRSGYDYCWKNFLSAQTLKAIESLKKQFHFLLKDTGLVDENLTTYNIWCRDENLVRAVICAGLFPGICSVVNKERSIALKTMEDGQVMLYASSVNGKEARIPYPWLVFNEKVKVNSVFLRDSTAVSDSMLLLFGGSICRGGLDGHLKMLGGYLEFFMKPDLAYTYVTLKKEMEELVLNKLQNPRMEIQQAGEELLQAVRLLVAEDPCGGQFVFGRQELKPKKEKFLGSGGGDNLKGQLQTLLSRAGHDNPTYKTKQLRSNSNLFRAMVEFNGMQFISEPCGSKKQAEMSAASEALDWLIGGGEAASASSPSRDFDHMSMAIKKTKKHHHHHRRT

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K14442	DHX36, RHAU	RNA degradation	map03018

Gene Ontology

GO term	Ontology	Name
GO:0003676	Molecular Function	nucleic acid binding
GO:0005524	Molecular Function	ATP binding
GO:0004386	Molecular Function	helicase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	36.960
SRP064423	SRR2545915	Juvenile tuber	29.160
SRP108465	SRR5643513	five period of Gastrodia elata	15.520
	SRR5643514	five period of Gastrodia elata	12.600
	SRR5643515	five period of Gastrodia elata	11.060
	SRR5643524	five period of Gastrodia elata	14.020
	SRR5643525	five period of Gastrodia elata	13.950
	SRR5643528	five period of Gastrodia elata	12.550
	SRR5643658	five period of Gastrodia elata	15.510
	SRR5643659	five period of Gastrodia elata	18.210
	SRR5643660	five period of Gastrodia elata	21.870
	SRR5643661	five period of Gastrodia elata	18.040
	SRR5643662	five period of Gastrodia elata	19.540
	SRR5643663	five period of Gastrodia elata	19.420
	SRR5643664	five period of Gastrodia elata	22.820
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	20.270
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	10.910
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	19.550
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	26.800
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	24.160
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	29.100
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	22.830
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	23.330
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	19.210
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	18.940
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	15.160
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	15.160
SRP279888	Gastro	Gastrodia elata tuber	21.49
	Juven	Juvenile tuber	28.09
	Mother_Gastro	Mother tuber of Gastrodia elata	12.28
	Mother_Juven	Mother tuber of Juvenile	23.52