Gene detail

Detail information of GWHGAAEX008415/evm.TU.scaffold_218.13

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG2148	Exocyst protein Sec3
nr	gi\|743873795\|ref\|XP_010906917.1\|	PREDICTED: exocyst complex component SEC3A-like [Elaeis guineensis]
Swissprot	tr\|Q9SX85\|SEC3A_ARATH	Exocyst complex component SEC3A
trEMBL	tr\|A0A061FCD4\|A0A061FCD4_THECC	Exocyst complex component sec3A isoform 1 {ECO:0000313\|EMBL:EOY14656.1}
TAIR	AT1G47550	exocyst complex component sec3A

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000213	407096	477254	-

Transcript Sequence
>GWHTAAEX008415 ATGGCGAAGTCCAGCGCCGACGATTTGGAGTTGAAGCGAGCATGCGAAGCCGCAATCGAAGGAAGTAAGCATAAGATAGTCCTCTCCATCCGCGTGGCCAAAAGCCGTGGAATTTTCGGCAAGTCTGCGAAACTCGTCCGTCATATGGCCAAAGCTAGGGTTCTTGCAATTACAACAAAGTCAAAGGGTCCAAAAACTAAAGCGTTTCTTCGAGTCCTAAAGCATTCTAATGGAGGAATACTTGAGCCTGCAAAAGTTTATAAGTTGAAGCATCTCTCAAAAGTGGAGGTCATCCAAAACGATCCATCAGGATGTACATTTATGCTGGGTTTTGATAATCTCAGAAGCCAAAGTGTTGCTCCTCCTCAGTGGACCATGCGAAATACATATGACAGGAATCGCTTGCTTCTTTGTATTTTAAATATGAGCAGGGAGATTTTGGACCGTCTCCCCAAAGTTGTTGGTATGGATATAGTGGAGATGGCTCTATGGGCTAAGGAAAATTCACCTTTTAGTACTAATCAGACCAGCGGTGAATATGGAATTGCAACATCCGTTATCTTGCAAGATGACAAACAAGTTACTGTTGAAAAGGATCTACCTTTTGAGGTTGAGGAGAAAGATATGGAGGCTCTGCTAAACTCATATGTATTGGGTGTTAGTGCAGCAGAGGAATTTTCTGAAAGGATGAAGCGTGAACTTCAAGCTTTAGAAGCAGCAAACGTTTATTCAATTTTAGAAAATGAAACCTTGGTAGAAGAGGTACTGCAAGGCCTTGAAGAGGCTGCCATTTGCGTTGAAGACATGCATGAATGGTTAGGTATCTTCAATGTTAAACTTAAGCACATGCGTGAAGACATCGAATCGATAGAAGCTCGTAACAACAAGTTGGAATTGCACTATGCAAATAGTAAAGCACTTGTGGAGGAGCTTGACAAGTTACTTGAACTGTTACATATCCCTCCTGAGATTGAAGCATCTCTGAAAGGTGGCTCATTTGATGAATCATTCGTGGTGACAAACGTTGAAGCATGTGAATGGTTAATTGGGGCGATATGTCGTCTGCAAGTTCCAAATCTGGATCCATCTTATGCAAACATGCAAGCTGTTAAGGAGAAACAACTGGAATTCGAAATGTTAAAAAGTACATTTGTTCGTCGTGCAACTGAGTTCTTAAGAAATTACTTTTCTAGTTTGGTGGATTTCTTGATAAATGGCCAAAATTATTTTTCTCGACGAGGATCATTGAAAAGACCTGACCATGCAGAATTGAGATTTAAGTGCAGAGCCTTTGCACGACTTATTCAAATCTTAAAGAGTCTTGACAGGAGCTGTTTGGGTCCTTTGAGAAAAGCATACTGTCGTTCCCTTAACTTGCTGCTTTGCCAAGAGGCTCGTGAATTTGCAAATGAGCTCCATTCTAGTACAAAGGCTGTAAAATCTTCTATCCCGTGGTTTGAATTATCTACGGGTTCTGTCCAAACAGCAAATGGTGCAGAAACTGCTGTTTTTTCTGAAGCCTATTCAAAAATGCTCACAGTTTTCATTCCTCTTCTTGTTGATGAGAGTTCTTTCTTTGCACACTTCATGTGTTTTGATATTCCTACATTGGCAAACGTCAGCAGAAATGGCTCAAACGACAGTGAAAACATTAATCATGATCAAGAAGGTAGCAACGGTATGGAGTTGACTTCTTTAAATGAATCTCTTCATGGATTATTTGATGGTTTTCAGAAGGAATTCTATTCCTTTTTGGACTGGGGATTTGAGTGTGATCCTTTGAGTTGCATAACAATGCATGGGATTACAGAGCGCTACCATTCTGGTCAGAAAGGCGAAGCAAGTGGATTTATCCGCCTATTACTTGATGACTTAGAAACTAGAATATCAAATAATTTTATAAAGTTTGTTGATGATTGTATTTATGAGATTGAGAAGACAGAACGCAATAATGCACACCAAGTTCTGCCATACATTCCAAGGTTTGCATTACTAGCTACACGAATGGAACAATACATCCAGGGCCAGTCTAGGGATTTAGTTGATCAGGCCTATACCAAAATTATTAGCATAATGTTTGTGTGCTTGGAGAGGGCTGCACAATTTGACCCAAAGTACTCTGATATTGTACTGCTCGAGAATTATGCAGCTTTCCAGAACAGTATTTACGATTTAGCCAATGTAGTGCCAACTCTAGCAAAGTTTTATCGTCAAGCCAGTGAATCATACGACCAAGCTTGCACACATCACATTAACATGGTTATTTTTATTACATTTGAGAGATTATTTCTCTTCGCTCGAAGGATTGAGGAGTTGGTGTTCACAATTACTCCGGAAGAAATACAATTTCATGTTGGGATGTCAAAATCTGACTTTCGAAAAATGCTGAAGGCTAGCTTATCAGGGTTTGAGAAGTCAATTGTTGTCATGCATAAGAAGTTGCAGAAGAATCTAACTTCAGAAGGGTTGCTGCCTTCTTTATGGGATAAATGCAAGAAGGGATTTCTGGACAAGTATGGAAGCTTTGTCAACCTAGTGAGCAAGATATACCCTGGAGAGTCTATCCCTTCAGTATCAGAGATGAGAGAGCTTCTGGCTCAATATAAATGA

Network for GWHGAAEX008415

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF15277.5	Sec3-PIP2_bind	50	144	2.10E-15
PF09763.8	Sec3_C	223	481	8.50E-41
PF09763.8	Sec3_C	541	852	7.20E-39

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006887	Biological Process	exocytosis
GO:0000145	Cellular Component	exocyst

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	2.870
SRP064423	SRR2545915	Juvenile tuber	3.290
SRP108465	SRR5643513	five period of Gastrodia elata	1.290
	SRR5643514	five period of Gastrodia elata	1.900
	SRR5643515	five period of Gastrodia elata	1.640
	SRR5643524	five period of Gastrodia elata	1.590
	SRR5643525	five period of Gastrodia elata	1.370
	SRR5643528	five period of Gastrodia elata	2.130
	SRR5643658	five period of Gastrodia elata	2.830
	SRR5643659	five period of Gastrodia elata	1.370
	SRR5643660	five period of Gastrodia elata	1.750
	SRR5643661	five period of Gastrodia elata	1.330
	SRR5643662	five period of Gastrodia elata	1.380
	SRR5643663	five period of Gastrodia elata	1.780
	SRR5643664	five period of Gastrodia elata	1.430
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	1.460
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	0.260
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	1.260
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	1.620
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	1.260
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	1.000
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	3.930
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	1.320
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	1.260
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	1.090
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	1.550
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	1.550
SRP279888	Gastro	Gastrodia elata tuber	1.77
	Juven	Juvenile tuber	2.09
	Mother_Gastro	Mother tuber of Gastrodia elata	2.25
	Mother_Juven	Mother tuber of Juvenile	2.80