Detail information of GWHGAAEX008420/evm.TU.scaffold_218.21


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG21900PolyC-binding proteins alphaCP-1 and related KH domain proteins
nrgi|743757525|ref|XP_010922375.1|0PREDICTED: KH domain-containing protein At4g18375-like [Elaeis guineensis]
Swissprottr|P58223|Y4837_ARATH3.00E-62KH domain-containing protein At4g18375
trEMBLtr|M0TGP0|M0TGP0_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr7P11520_001}
TAIRAT5G152700RNA-binding KH domain-containing protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000213755459758499-
Transcript Sequence

Network for GWHGAAEX008420

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00013.28KH_145981.10E-10
PF00013.28KH_11422104.00E-13
PF00013.28KH_12823281.10E-09
PF00013.28KH_13664325.70E-12
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0003676Molecular Functionnucleic acid binding
GO:0003723Molecular FunctionRNA binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms155.050
SRR2545915Juvenile tuber182.170
SRP108465SRR5643513five period of Gastrodia elata119.540
SRR5643514five period of Gastrodia elata109.150
SRR5643515five period of Gastrodia elata111.680
SRR5643524five period of Gastrodia elata113.650
SRR5643525five period of Gastrodia elata56.310
SRR5643528five period of Gastrodia elata51.670
SRR5643658five period of Gastrodia elata56.870
SRR5643659five period of Gastrodia elata148.200
SRR5643660five period of Gastrodia elata165.470
SRR5643661five period of Gastrodia elata153.200
SRR5643662five period of Gastrodia elata138.680
SRR5643663five period of Gastrodia elata137.930
SRR5643664five period of Gastrodia elata132.000
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1133.020
SRR6049655Rhizomagastrodiae_C368-T10_good_1102.780
SRR6049656Rhizomagastrodiae_C368-T07_good_1127.310
SRR6049657Rhizomagastrodiae_C368-T07_good_1140.050
SRR6049658Rhizomagastrodiae_C368-T04_good_1129.420
SRR6049659Rhizomagastrodiae_C368-T04_good_1140.110
SRR6049660Rhizomagastrodiae_C368-T01_good_1144.370
SRR6049661Rhizomagastrodiae_C368-T04_good_1132.620
SRR6049662Rhizomagastrodiae_C368-T01_good_1131.160
SRR6049663Rhizomagastrodiae_C368-T01_good_1138.990
SRR6049664Rhizomagastrodiae_C368-T10_good_1117.610
SRR6049665Rhizomagastrodiae_C368-T10_good_1117.610
SRP279888GastroGastrodia elata tuber 136.58
JuvenJuvenile tuber162.24
Mother_GastroMother tuber of Gastrodia elata 73.68
Mother_JuvenMother tuber of Juvenile 126.92