Detail information of GWHGAAEX008423/evm.TU.scaffold_218.25


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|312137049|ref|YP_004004386.1|2.00E-34ribosomal RNA-processing protein rrp42 [Methanothermus fervidus DSM 2088]
KOGKOG16122.00E-145Exosomal 3'-5' exoribonuclease complex, subunit Rrp42
nrgi|743877645|ref|XP_010907957.1|1.32E-162PREDICTED: exosome complex component RRP42 [Elaeis guineensis]
trEMBLtr|M0SRG9|M0SRG9_MUSAM1.00E-162Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr4P23580_001}
TAIRAT3G077502.00E-1453'-5'-exoribonuclease family protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX000002139284241008275+
Transcript Sequence

Network for GWHGAAEX008423

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01138.20RNase_PH2273673.30E-25
PF03725.14RNase_PH_C3984613.50E-09
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K12589RRP42, EXOSC7 RNA degradation map03018

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms14.020
SRR2545915Juvenile tuber11.430
SRP108465SRR5643513five period of Gastrodia elata21.150
SRR5643514five period of Gastrodia elata20.480
SRR5643515five period of Gastrodia elata17.300
SRR5643524five period of Gastrodia elata19.770
SRR5643525five period of Gastrodia elata19.500
SRR5643528five period of Gastrodia elata18.270
SRR5643658five period of Gastrodia elata18.470
SRR5643659five period of Gastrodia elata18.490
SRR5643660five period of Gastrodia elata20.440
SRR5643661five period of Gastrodia elata20.350
SRR5643662five period of Gastrodia elata18.720
SRR5643663five period of Gastrodia elata17.300
SRR5643664five period of Gastrodia elata18.600
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.370
SRR6049655Rhizomagastrodiae_C368-T10_good_16.890
SRR6049656Rhizomagastrodiae_C368-T07_good_120.770
SRR6049657Rhizomagastrodiae_C368-T07_good_119.320
SRR6049658Rhizomagastrodiae_C368-T04_good_121.690
SRR6049659Rhizomagastrodiae_C368-T04_good_123.970
SRR6049660Rhizomagastrodiae_C368-T01_good_119.880
SRR6049661Rhizomagastrodiae_C368-T04_good_121.210
SRR6049662Rhizomagastrodiae_C368-T01_good_122.470
SRR6049663Rhizomagastrodiae_C368-T01_good_122.410
SRR6049664Rhizomagastrodiae_C368-T10_good_123.350
SRR6049665Rhizomagastrodiae_C368-T10_good_123.350
SRP279888GastroGastrodia elata tuber 19.54
JuvenJuvenile tuber22.96
Mother_GastroMother tuber of Gastrodia elata 20.56
Mother_JuvenMother tuber of Juvenile 16.69