Detail information of GWHGAAEX008430/evm.TU.scaffold_219.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|338175311|ref|YP_004652121.1| | 4.00E-157 | tyrosyl-tRNA synthetase [Parachlamydia acanthamoebae UV-7] |
| KOG | KOG2623 | 0 | Tyrosyl-tRNA synthetase |
| nr | gi|672163834|ref|XP_008801775.1| | 0 | PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Phoenix dactylifera] |
| trEMBL | tr|K4A909|K4A909_SETIT | 0 | Tyrosine--tRNA ligase {ECO:0000256|RuleBase:RU361234} |
| TAIR | AT3G02660 | 0 | Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000224 | 14174 | 17697 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008430
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00579.24 | tRNA-synt_1b | 109 | 424 | 1.50E-68 |
| PF01479.24 | S4 | 465 | 494 | 6.40E-06 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01866 | YARS, tyrS | Aminoacyl-tRNA biosynthesis | map00970 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006418 | Biological Process | tRNA aminoacylation for protein translation |
| GO:0006437 | Biological Process | tyrosyl-tRNA aminoacylation |
| GO:0003723 | Molecular Function | RNA binding |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0004812 | Molecular Function | aminoacyl-tRNA ligase activity |
| GO:0000166 | Molecular Function | nucleotide binding |
| GO:0004831 | Molecular Function | tyrosine-tRNA ligase activity |
| GO:0005737 | Cellular Component | cytoplasm |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 11.400 |
| SRR2545915 | Juvenile tuber | 8.890 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.840 |
| SRR5643514 | five period of Gastrodia elata | 11.510 | |
| SRR5643515 | five period of Gastrodia elata | 11.660 | |
| SRR5643524 | five period of Gastrodia elata | 13.040 | |
| SRR5643525 | five period of Gastrodia elata | 14.600 | |
| SRR5643528 | five period of Gastrodia elata | 13.410 | |
| SRR5643658 | five period of Gastrodia elata | 11.680 | |
| SRR5643659 | five period of Gastrodia elata | 13.250 | |
| SRR5643660 | five period of Gastrodia elata | 12.120 | |
| SRR5643661 | five period of Gastrodia elata | 11.460 | |
| SRR5643662 | five period of Gastrodia elata | 10.060 | |
| SRR5643663 | five period of Gastrodia elata | 11.760 | |
| SRR5643664 | five period of Gastrodia elata | 9.720 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 9.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.960 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 13.380 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 11.790 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.650 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 11.360 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.390 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.250 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 13.960 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 12.010 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 13.020 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 13.020 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 11.55 |
| Juven | Juvenile tuber | 17.56 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.77 | |
| Mother_Juven | Mother tuber of Juvenile | 15.72 |