Detail information of GWHGAAEX008444/evm.TU.scaffold_219.17


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG25022.00E-148Tub family proteins
nrgi|695066926|ref|XP_009380364.1|1.89E-175PREDICTED: tubby-like F-box protein 5 [Musa acuminata subsp. malaccensis]
Swissprottr|Q6Z2G9|TLP5_ORYSJ3.00E-165Tubby-like F-box protein 5
trEMBLtr|F6H054|F6H054_VITVI1.00E-169Tubby-like F-box protein {ECO:0000256|RuleBase:RU361125}
TAIRAT1G472702.00E-148tubby like protein 6

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000224561006572070+
Transcript Sequence

Network for GWHGAAEX008444

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module6

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00646.32F-box38841.50E-08
PF01167.17Tub1033732.00E-89
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyTUB
Ubiquitin FamilyF-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515Molecular Functionprotein binding

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.420
SRR2545915Juvenile tuber24.350
SRP108465SRR5643513five period of Gastrodia elata16.860
SRR5643514five period of Gastrodia elata16.620
SRR5643515five period of Gastrodia elata15.720
SRR5643524five period of Gastrodia elata14.630
SRR5643525five period of Gastrodia elata8.470
SRR5643528five period of Gastrodia elata12.680
SRR5643658five period of Gastrodia elata12.810
SRR5643659five period of Gastrodia elata9.930
SRR5643660five period of Gastrodia elata11.100
SRR5643661five period of Gastrodia elata9.360
SRR5643662five period of Gastrodia elata6.840
SRR5643663five period of Gastrodia elata8.270
SRR5643664five period of Gastrodia elata9.040
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_121.590
SRR6049655Rhizomagastrodiae_C368-T10_good_120.150
SRR6049656Rhizomagastrodiae_C368-T07_good_118.460
SRR6049657Rhizomagastrodiae_C368-T07_good_136.590
SRR6049658Rhizomagastrodiae_C368-T04_good_133.930
SRR6049659Rhizomagastrodiae_C368-T04_good_138.910
SRR6049660Rhizomagastrodiae_C368-T01_good_126.870
SRR6049661Rhizomagastrodiae_C368-T04_good_133.990
SRR6049662Rhizomagastrodiae_C368-T01_good_115.740
SRR6049663Rhizomagastrodiae_C368-T01_good_115.520
SRR6049664Rhizomagastrodiae_C368-T10_good_19.960
SRR6049665Rhizomagastrodiae_C368-T10_good_19.960
SRP279888GastroGastrodia elata tuber 8.69
JuvenJuvenile tuber16.11
Mother_GastroMother tuber of Gastrodia elata 9.93
Mother_JuvenMother tuber of Juvenile 12.23