Detail information of GWHGAAEX008446/evm.TU.scaffold_219.19
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|189502232|ref|YP_001957949.1| | 1.00E-09 | hypothetical protein Aasi_0849 [Candidatus Amoebophilus asiaticus 5a2] |
| KOG | KOG0167 | 2.00E-95 | FOG: Armadillo/beta-catenin-like repeats |
| nr | gi|672144079|ref|XP_008795932.1| | 0 | PREDICTED: U-box domain-containing protein 7-like [Phoenix dactylifera] |
| Swissprot | tr|Q9CAG5|PUB7_ARATH | 5.00E-96 | U-box domain-containing protein 7 |
| trEMBL | tr|M0S6K5|M0S6K5_MUSAM | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P09640_001} |
| TAIR | AT1G67530 | 2.00E-95 | ARM repeat superfamily protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000224 | 617784 | 639123 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008446
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module4 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF04564.14 | U-box | 285 | 354 | 6.10E-18 |
| PF05804.11 | KAP | 525 | 738 | 4.70E-05 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U-box |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016567 | Biological Process | protein ubiquitination |
| GO:0004842 | Molecular Function | ubiquitin-protein transferase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.650 |
| SRR2545915 | Juvenile tuber | 15.530 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 4.820 |
| SRR5643514 | five period of Gastrodia elata | 4.770 | |
| SRR5643515 | five period of Gastrodia elata | 4.450 | |
| SRR5643524 | five period of Gastrodia elata | 6.190 | |
| SRR5643525 | five period of Gastrodia elata | 13.750 | |
| SRR5643528 | five period of Gastrodia elata | 14.810 | |
| SRR5643658 | five period of Gastrodia elata | 21.070 | |
| SRR5643659 | five period of Gastrodia elata | 6.170 | |
| SRR5643660 | five period of Gastrodia elata | 6.820 | |
| SRR5643661 | five period of Gastrodia elata | 5.470 | |
| SRR5643662 | five period of Gastrodia elata | 5.690 | |
| SRR5643663 | five period of Gastrodia elata | 6.490 | |
| SRR5643664 | five period of Gastrodia elata | 6.220 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 5.560 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.200 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 5.450 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 6.830 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 7.060 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.670 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 6.490 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 6.670 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 5.690 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 6.570 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 7.090 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 7.090 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.10 |
| Juven | Juvenile tuber | 5.53 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 18.89 | |
| Mother_Juven | Mother tuber of Juvenile | 16.62 |