Detail information of GWHGAAEX008448/evm.TU.scaffold_219.21
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|543964300|ref|YP_008547335.1| | 4.00E-154 | dihydroorotase [Sulfuricella denitrificans skB26] |
| KOG | KOG2902 | 0 | Dihydroorotase |
| nr | gi|359485440|ref|XP_002274917.2| | 0 | PREDICTED: dihydroorotase, mitochondrial isoform X2 [Vitis vinifera] |
| Swissprot | tr|O04904|PYRC_ARATH | 0 | Dihydroorotase, mitochondrial (Precursor) |
| trEMBL | tr|F6H5E5|F6H5E5_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB47294.1} |
| TAIR | AT4G22930 | 0 | pyrimidin 4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000224 | 653869 | 656377 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008448
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01979.19 | Amidohydro_1 | 40 | 344 | 2.90E-25 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K01465 | URA4, pyrC | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0019856 | Biological Process | pyrimidine nucleobase biosynthetic process |
| GO:0004151 | Molecular Function | dihydroorotase activity |
| GO:0016787 | Molecular Function | hydrolase activity |
| GO:0016812 | Molecular Function | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 14.240 |
| SRR2545915 | Juvenile tuber | 16.350 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 11.710 |
| SRR5643514 | five period of Gastrodia elata | 13.440 | |
| SRR5643515 | five period of Gastrodia elata | 10.050 | |
| SRR5643524 | five period of Gastrodia elata | 11.090 | |
| SRR5643525 | five period of Gastrodia elata | 9.300 | |
| SRR5643528 | five period of Gastrodia elata | 8.100 | |
| SRR5643658 | five period of Gastrodia elata | 10.790 | |
| SRR5643659 | five period of Gastrodia elata | 9.180 | |
| SRR5643660 | five period of Gastrodia elata | 9.260 | |
| SRR5643661 | five period of Gastrodia elata | 8.660 | |
| SRR5643662 | five period of Gastrodia elata | 10.030 | |
| SRR5643663 | five period of Gastrodia elata | 10.760 | |
| SRR5643664 | five period of Gastrodia elata | 9.750 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 10.920 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 6.550 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 10.110 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 12.660 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 10.710 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 13.090 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 11.230 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 11.630 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 7.450 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 8.120 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 9.070 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 9.070 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 6.65 |
| Juven | Juvenile tuber | 10.84 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.53 | |
| Mother_Juven | Mother tuber of Juvenile | 7.70 |