Detail information of GWHGAAEX008450/evm.TU.scaffold_219.23


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|148658144|ref|YP_001278349.1|4.00E-139carbamoyl-phosphate synthase small subunit [Roseiflexus sp. RS-1]
KOGKOG03700Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase)
nrgi|672131893|ref|XP_008789513.1|0PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic isoform X1 [Phoenix dactylifera]
Swissprottr|Q6YV23|CARA_ORYSJ0Carbamoyl-phosphate synthase small chain, chloroplastic (Precursor)
trEMBLtr|M0T8E7|M0T8E7_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P19490_001}
TAIRAT3G277400carbamoyl phosphate synthetase A

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000224716497726538+
Transcript Sequence

Network for GWHGAAEX008450

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00988.21CPSase_sm_chain852113.40E-47
PF00117.27GATase2744487.70E-44
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01956carA, CPA1 Metabolic pathways map01100
Pyrimidine metabolismmap00240

Gene Ontology

GO term OntologyName
GO:0006207Biological Process'de novo' pyrimidine nucleobase biosynthetic process
GO:0006541Biological Processglutamine metabolic process
GO:0004088Molecular Functioncarbamoyl-phosphate synthase (glutamine-hydrolyzing) activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms29.800
SRR2545915Juvenile tuber31.630
SRP108465SRR5643513five period of Gastrodia elata38.890
SRR5643514five period of Gastrodia elata41.940
SRR5643515five period of Gastrodia elata37.530
SRR5643524five period of Gastrodia elata38.590
SRR5643525five period of Gastrodia elata49.630
SRR5643528five period of Gastrodia elata41.510
SRR5643658five period of Gastrodia elata45.630
SRR5643659five period of Gastrodia elata34.210
SRR5643660five period of Gastrodia elata30.240
SRR5643661five period of Gastrodia elata32.690
SRR5643662five period of Gastrodia elata33.340
SRR5643663five period of Gastrodia elata36.960
SRR5643664five period of Gastrodia elata34.100
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_139.220
SRR6049655Rhizomagastrodiae_C368-T10_good_147.550
SRR6049656Rhizomagastrodiae_C368-T07_good_146.010
SRR6049657Rhizomagastrodiae_C368-T07_good_145.490
SRR6049658Rhizomagastrodiae_C368-T04_good_147.260
SRR6049659Rhizomagastrodiae_C368-T04_good_153.300
SRR6049660Rhizomagastrodiae_C368-T01_good_141.880
SRR6049661Rhizomagastrodiae_C368-T04_good_142.710
SRR6049662Rhizomagastrodiae_C368-T01_good_141.270
SRR6049663Rhizomagastrodiae_C368-T01_good_141.490
SRR6049664Rhizomagastrodiae_C368-T10_good_141.290
SRR6049665Rhizomagastrodiae_C368-T10_good_141.290
SRP279888GastroGastrodia elata tuber 36.81
JuvenJuvenile tuber38.89
Mother_GastroMother tuber of Gastrodia elata 38.55
Mother_JuvenMother tuber of Juvenile 37.45