Detail information of GWHGAAEX008451/evm.TU.scaffold_219.24


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|116625362|ref|YP_827518.1|6.00E-47DNA-3-methyladenine glycosylase II [Candidatus Solibacter usitatus Ellin6076]
KOGKOG19181.00E-853-methyladenine DNA glycosidase
nrgi|672161775|ref|XP_008800716.1|1.37E-102PREDICTED: probable DNA-3-methyladenine glycosylase 2 [Phoenix dactylifera]
trEMBLtr|M0T959|M0T959_MUSAM3.00E-101Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr6P22110_001}
TAIRAT1G752301.00E-85DNA glycosylase superfamily protein

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000224727142735521+
Transcript Sequence

Network for GWHGAAEX008451

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00730.24HhH-GPD1112563.90E-18
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01247alkA Base excision repair map03410

Gene Ontology

GO term OntologyName
GO:0006281Biological ProcessDNA repair
GO:0006284Biological Processbase-excision repair
GO:0003824Molecular Functioncatalytic activity

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms9.080
SRR2545915Juvenile tuber10.000
SRP108465SRR5643513five period of Gastrodia elata23.490
SRR5643514five period of Gastrodia elata18.690
SRR5643515five period of Gastrodia elata22.020
SRR5643524five period of Gastrodia elata18.870
SRR5643525five period of Gastrodia elata24.990
SRR5643528five period of Gastrodia elata22.140
SRR5643658five period of Gastrodia elata20.930
SRR5643659five period of Gastrodia elata21.420
SRR5643660five period of Gastrodia elata25.290
SRR5643661five period of Gastrodia elata29.020
SRR5643662five period of Gastrodia elata28.900
SRR5643663five period of Gastrodia elata22.420
SRR5643664five period of Gastrodia elata28.450
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_132.640
SRR6049655Rhizomagastrodiae_C368-T10_good_156.120
SRR6049656Rhizomagastrodiae_C368-T07_good_133.490
SRR6049657Rhizomagastrodiae_C368-T07_good_130.360
SRR6049658Rhizomagastrodiae_C368-T04_good_137.310
SRR6049659Rhizomagastrodiae_C368-T04_good_145.630
SRR6049660Rhizomagastrodiae_C368-T01_good_137.860
SRR6049661Rhizomagastrodiae_C368-T04_good_139.310
SRR6049662Rhizomagastrodiae_C368-T01_good_125.140
SRR6049663Rhizomagastrodiae_C368-T01_good_136.870
SRR6049664Rhizomagastrodiae_C368-T10_good_126.910
SRR6049665Rhizomagastrodiae_C368-T10_good_126.910
SRP279888GastroGastrodia elata tuber 26.94
JuvenJuvenile tuber41.21
Mother_GastroMother tuber of Gastrodia elata 38.32
Mother_JuvenMother tuber of Juvenile 46.63