Gene detail

Detail information of GWHGAAEX008452/evm.TU.scaffold_219.25

Functional Annotation

Database	Orthologs	Annotation
KOG	KOG0906	Phosphatidylinositol 3-kinase VPS34, involved in signal transduction
nr	gi\|743851176\|ref\|XP_010940071.1\|	PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Elaeis guineensis]
Swissprot	tr\|P42347\|PI3K1_SOYBN	Phosphatidylinositol 3-kinase, root isoform
trEMBL	tr\|A0A061E791\|A0A061E791_THECC	Phosphatidylinositol 3-kinase {ECO:0000256\|PIRNR:PIRNR000587}
TAIR	AT1G60490	vacuolar protein sorting 34

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000224	737171	812718	+

Transcript Sequence
>GWHTAAEX008452 ATGACTAACCACTGGGCCCTCTTTAGCCAATTTAAACCCCCTCAAAATCTTCTGGACTCTCCTTTGATCAATCCAAAGCTCCCAAGGCATTCAATTTCTCCCAATTTCTTCTCAGTCCACTGCCATTCCCCTCTCGAGCCTGGCGGACCCAAACCAGCTCAGAGACTCTTTCCCGGTGATCTAGTGGACAATTCCCAGCGTTCGAGTACTCGAAATCTAGCCCATACCCTCACGAAGCCTACCAGCCACTCTGCGATGAATGGGCACGAGTACCGGTTCTTCCTCTCCTGCGATATTAGCCTGCCCGTGACATTGCGGATCGACAGATTGGAAGGAAATCTTCCGCAGTCCTCCGTTGCTATTTCTGAAGTTGATTCTTCATCAGGAAGCAAGAATGCAGAGCTATTTGCTGAATGTGCACTGTACATAGATGGAACCCTCTTTGGCCTGCCCACTAGAATAAGACTAGAATCTTCTGGACAATCGTATTGTTCTAATGAGCTGATCACATTAAGCACAAAGTATCGGGATCTGACCCCTCAAGCACAACTCTCATTGACTGTTTGGGATGTATCATGTGATGATGGTGAATGTGTAGTTGGTGGTGCCACTATTTTTCTTTTCAATAAGCAAAAGCAACTTAGAACCGGGAGGCAAAAGCTTCGACTTTGGCCTAGAAGAGAGGCAGATGGATCGATTCCATCTAGCACTCCTGGGAAGGTCCCTAAATATGAGCTTGATGAGATTGAGCGTCTTGAGAGGCTTGTAAATAAATATGAGAGGGGACGGATACAATGCATTGATTGGCTTGATCGGCTTACATTCAAAGCTATTGACAAGCTCAAGGAACGAGAAGGAAATATTTGTGGCAATTCTCACCTAAGCCTTATTGTTGAATTTTGCAGTTTCGAACATACTGTGGTTTTTCAGGAGACCGGAGCAAATTTCTTGACACCATCTCCTGTATCATCAACAAATGAACTTGTTGTTGTATGGGATCCGGAAGTTGGAAGGACAAATCCTTCTGAGCACAAACAACTGAAGCTTGCAAGGAGCTTGACCAGGGGGATAATTGATAAGGATCTGAAACCTAGCTCTAATGAAAGGAAGTCAATACAGAGGATTCTCAAGTACCCTCCTACTCGAACATTGGCAGGTGATGAACGACAGTTGCTGTGGAAATTTCGTTTTTCATTGATGTCTGAGAAGAAAGCCCTCACCAAATTTCTACGATGTGTTGAATGGAGTGATATTCAGGAATCTAAACAAGCAATAGAGCTAATGGGAAAGTGGGAGACCATTGATGTTACTGATGCTCTTGAGCTTCTATCGCCTGTTTTTGAGAGTGAAGAGGTCCGTGCATATGCAGTGAGTGTTCTTGGGAGAGCTGATGATGACGAGCTCCATTGTTATTTACTTCAGTTAGTGCAAGCTCTTCGGTTTGAGAGATCAGATAAGTCTCGGTTGTCAGCATTTCTTGTGCAGCGCGCCCTATCAAATATTGAGTTGGCTAGCTTTCTTCGGTGGTATGTAGCAGTAGAGCTTCATGATCCTGCATATGCCAAGCGTTTTTATTGTACTTATGACATGCTGGAAGATAGCATGATGAAATTGAAAGTTGGAGTCAATGGAGACGAAGATGGTTTAAAACTGTGGCAGAGTTTGGTTCGTCAAACAGAATTAACAGCTCAGCTTTGTTCTATTATGAGAGATGTTAGGAATGTACGTGGGAGCACTCAGAAGAAAATTGATAAACTGCGGGAGCTCCTTTCAGGGCTTCTCAGTGAGCTTACCTATTTTGATGAGCCAATCCGTTCACCTTTGGCACCTCGAATGCTCATAACTGGGATAGTTCCATCCGAGTCATCACTTTTTAAGAGTGCTTTGCATCCTCTGCGTTTAACACTTAGGACAGCTTATGGAGGAACTTGTAAAGTAATATTTAAAAAAGGAGATGACCTTCGGCAAGATCAATTGGTGATTCAAATGGTTTCTCTTATGGACCGCTTGCTTAAATTGGAGAATCTTGACTTACATTTGACACCTTATAGAGTACTTGCCACTGGTCAGGATGAGGGGATGATGGAATTCATTCCATCCAGCTCCTTAGCTCAGATTCTATCTGAGCACAGAGGCATAATAAATTATCTCCAAAAGTTTCACGCAGATGAAGATGGACCCTTTGGTATAACAGCAACCTGTCTTGAAACTTTTATAAAAAGCTGTGCTGGTTATTCTGTCATCACATATATTTTGGGCATTGGTGACAGGCATCTGGATAACCTACTCCTAAGGGATGATGGGCGCCTATTCCATGTTGATTTCGGCTTCATATTGGGCAGAGACCCGAAGCCGTTTCCTCCACCTATGAAACTCTGCAAAGAAATGGTGGAGGCCATGGGCGGTGCAGAGAGCCAATACTATACAAGGTTCAAATCCTACTGCTGCGAGGCTTACAACATACTGCGGAAATCCAGCAACCTCATCCTGAATCTTTTCCATCTGATGGCTGGTTCTAGCATTCCCGACATTGCTTCAGATCCCGAGAAAGGCATTCTTAAGCTTCAGGAGAAATTTCGGTTGGATTTGGACGACGAGGCATCAGTGCACTTTTTCCAGGATCTAATCAATGACAGCGTCAGCGCCCTGTTTCCTCAAATGGTTGAGACGATTCACAGATGGGCTCAGTATTGGCGCTAA

Network for GWHGAAEX008452

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00792.23	PI3K_C2	133	275	3.30E-35
PF00613.19	PI3Ka	360	536	1.10E-63
PF00454.26	PI3_PI4_kinase	645	845	6.60E-48

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00914	PIK3C3, VPS34	Metabolic pathways	map01100
		Inositol phosphate metabolism	map00562
		Apelin signaling pathway	map04371
		Phosphatidylinositol signaling system	map04070
		Phagosome	map04145
		Autophagy - animal	map04140
		Autophagy - yeast	map04138
		Autophagy - other	map04136

Gene Ontology

GO term	Ontology	Name
GO:0048015	Biological Process	phosphatidylinositol-mediated signaling
GO:0046854	Biological Process	phosphatidylinositol phosphorylation
GO:0016303	Molecular Function	1-phosphatidylinositol-3-kinase activity
GO:0016301	Molecular Function	kinase activity

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	16.600
SRP064423	SRR2545915	Juvenile tuber	14.220
SRP108465	SRR5643513	five period of Gastrodia elata	9.040
	SRR5643514	five period of Gastrodia elata	9.920
	SRR5643515	five period of Gastrodia elata	8.830
	SRR5643524	five period of Gastrodia elata	8.980
	SRR5643525	five period of Gastrodia elata	11.090
	SRR5643528	five period of Gastrodia elata	9.260
	SRR5643658	five period of Gastrodia elata	11.470
	SRR5643659	five period of Gastrodia elata	8.990
	SRR5643660	five period of Gastrodia elata	9.870
	SRR5643661	five period of Gastrodia elata	8.110
	SRR5643662	five period of Gastrodia elata	6.500
	SRR5643663	five period of Gastrodia elata	8.420
	SRR5643664	five period of Gastrodia elata	8.640
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	11.950
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	8.950
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	11.180
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	12.490
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	15.960
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	17.930
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	13.890
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	15.580
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	15.560
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	15.420
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	11.990
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	11.990
SRP279888	Gastro	Gastrodia elata tuber	10.99
	Juven	Juvenile tuber	6.96
	Mother_Gastro	Mother tuber of Gastrodia elata	13.40
	Mother_Juven	Mother tuber of Juvenile	11.12