Detail information of GWHGAAEX008453/evm.TU.scaffold_219.26
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383766673|ref|YP_005445654.1| | 2.00E-47 | hypothetical protein PSMK_15980 [Phycisphaera mikurensis NBRC 102666] |
| KOG | KOG2201 | 0 | Pantothenate kinase PanK and related proteins |
| nr | gi|672144061|ref|XP_008795922.1| | 0 | PREDICTED: pantothenate kinase 2-like isoform X1 [Phoenix dactylifera] |
| Swissprot | tr|Q0J035|PANK2_ORYSJ | 0 | Pantothenate kinase 2 |
| trEMBL | tr|V4TN09|V4TN09_9ROSI | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESR53070.1} |
| TAIR | AT4G32180_1 | 0 | Unannotated protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000224 | 813871 | 861009 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008453
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF03630.13 | Fumble | 76 | 421 | 1.30E-131 |
| PF01937.18 | DUF89 | 616 | 890 | 2.40E-41 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K09680 | coaW | Metabolic pathways | map01100 |
| Pantothenate and CoA biosynthesis | map00770 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0015937 | Biological Process | coenzyme A biosynthetic process |
| GO:0004594 | Molecular Function | pantothenate kinase activity |
| GO:0005524 | Molecular Function | ATP binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 27.400 |
| SRR2545915 | Juvenile tuber | 20.700 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 18.960 |
| SRR5643514 | five period of Gastrodia elata | 21.040 | |
| SRR5643515 | five period of Gastrodia elata | 15.990 | |
| SRR5643524 | five period of Gastrodia elata | 19.900 | |
| SRR5643525 | five period of Gastrodia elata | 21.700 | |
| SRR5643528 | five period of Gastrodia elata | 21.130 | |
| SRR5643658 | five period of Gastrodia elata | 25.000 | |
| SRR5643659 | five period of Gastrodia elata | 10.260 | |
| SRR5643660 | five period of Gastrodia elata | 11.220 | |
| SRR5643661 | five period of Gastrodia elata | 10.660 | |
| SRR5643662 | five period of Gastrodia elata | 8.410 | |
| SRR5643663 | five period of Gastrodia elata | 7.640 | |
| SRR5643664 | five period of Gastrodia elata | 9.410 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 16.670 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 13.770 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 17.340 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.440 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 21.240 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 22.780 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 20.130 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 20.260 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 19.590 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 20.750 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 16.490 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 16.490 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 10.74 |
| Juven | Juvenile tuber | 10.93 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 14.53 | |
| Mother_Juven | Mother tuber of Juvenile | 12.91 |