Detail information of GWHGAAEX008454/evm.TU.scaffold_219.27
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|383757398|ref|YP_005436383.1| | 4.00E-66 | Fe-S cluster assembly scaffold protein IscU [Rubrivivax gelatinosus IL144] |
| KOG | KOG3361 | 4.00E-82 | Iron binding protein involved in Fe-S cluster formation |
| nr | gi|604343729|gb|EYU42583.1| | 1.27E-89 | hypothetical protein MIMGU_mgv1a015215mg [Erythranthe guttata] |
| Swissprot | tr|O49627|ISU1_ARATH | 1.00E-82 | Iron-sulfur cluster assembly protein 1 (Precursor) |
| trEMBL | tr|A0A022RS56|A0A022RS56_ERYGU | 5.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:EYU42583.1} |
| TAIR | AT4G22220 | 4.00E-82 | SufE/NifU family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000224 | 882237 | 888706 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008454
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01592.15 | NifU_N | 26 | 150 | 2.10E-57 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| -- | -- | -- | -- |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0016226 | Biological Process | iron-sulfur cluster assembly |
| GO:0005506 | Molecular Function | iron ion binding |
| GO:0051536 | Molecular Function | iron-sulfur cluster binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 127.630 |
| SRR2545915 | Juvenile tuber | 121.100 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 81.130 |
| SRR5643514 | five period of Gastrodia elata | 79.060 | |
| SRR5643515 | five period of Gastrodia elata | 74.760 | |
| SRR5643524 | five period of Gastrodia elata | 77.640 | |
| SRR5643525 | five period of Gastrodia elata | 97.840 | |
| SRR5643528 | five period of Gastrodia elata | 80.420 | |
| SRR5643658 | five period of Gastrodia elata | 73.150 | |
| SRR5643659 | five period of Gastrodia elata | 82.240 | |
| SRR5643660 | five period of Gastrodia elata | 99.570 | |
| SRR5643661 | five period of Gastrodia elata | 90.270 | |
| SRR5643662 | five period of Gastrodia elata | 86.660 | |
| SRR5643663 | five period of Gastrodia elata | 81.470 | |
| SRR5643664 | five period of Gastrodia elata | 95.530 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 83.050 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 66.760 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 77.550 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 90.940 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 95.840 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 115.730 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 86.040 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 97.040 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 61.710 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 68.640 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 64.040 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 64.040 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 126.85 |
| Juven | Juvenile tuber | 95.30 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 98.70 | |
| Mother_Juven | Mother tuber of Juvenile | 119.88 |