Detail information of GWHGAAEX008456/evm.TU.scaffold_219.29
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|94970081|ref|YP_592129.1| | 2.00E-25 | uridine kinase [Candidatus Koribacter versatilis Ellin345] |
| KOG | KOG4203 | 0 | Armadillo/beta-Catenin/plakoglobin |
| nr | gi|695063329|ref|XP_009420163.1| | 0 | PREDICTED: uridine-cytidine kinase C-like [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q9FKS0|UKL1_ARATH | 3.00E-16 | Putative uracil phosphoribosyltransferase (Precursor) |
| trEMBL | tr|E6NU51|E6NU51_JATCU | 0 | Uridine kinase {ECO:0000256|RuleBase:RU003825} |
| TAIR | AT1G26190 | 0 | Phosphoribulokinase / Uridine kinase family |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000224 | 891228 | 934742 | + |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008456
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00485.17 | PRK | 68 | 236 | 2.50E-26 |
| PF01928.20 | CYTH | 271 | 404 | 5.80E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00876 | udk, UCK | Metabolic pathways | map01100 |
| Pyrimidine metabolism | map00240 | ||
| Drug metabolism - other enzymes | map00983 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0005524 | Molecular Function | ATP binding |
| GO:0016301 | Molecular Function | kinase activity |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 17.050 |
| SRR2545915 | Juvenile tuber | 19.110 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 21.510 |
| SRR5643514 | five period of Gastrodia elata | 20.760 | |
| SRR5643515 | five period of Gastrodia elata | 19.470 | |
| SRR5643524 | five period of Gastrodia elata | 20.280 | |
| SRR5643525 | five period of Gastrodia elata | 18.280 | |
| SRR5643528 | five period of Gastrodia elata | 30.460 | |
| SRR5643658 | five period of Gastrodia elata | 17.770 | |
| SRR5643659 | five period of Gastrodia elata | 23.270 | |
| SRR5643660 | five period of Gastrodia elata | 22.340 | |
| SRR5643661 | five period of Gastrodia elata | 21.990 | |
| SRR5643662 | five period of Gastrodia elata | 22.550 | |
| SRR5643663 | five period of Gastrodia elata | 20.590 | |
| SRR5643664 | five period of Gastrodia elata | 18.430 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 18.490 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 18.940 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 18.900 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 17.170 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 16.500 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 16.310 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 19.370 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 18.190 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 26.260 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 24.650 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 24.660 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 24.660 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 24.37 |
| Juven | Juvenile tuber | 23.29 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 40.56 | |
| Mother_Juven | Mother tuber of Juvenile | 43.50 |