Detail information of GWHGAAEX008457/evm.TU.scaffold_219.30
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|479131227|ref|YP_005071187.1| | 8.00E-107 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Arthrospira platensis NIES-39] |
| nr | gi|585474724|gb|AHJ57307.1| | 0 | chloroplast 1-deoxy-D-xylulose-5-phosphate reductoisomerase [Lilium longiflorum] |
| Swissprot | tr|Q8W250|DXR_ORYSJ | 0 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplastic (Precursor) |
| trEMBL | tr|W6HY22|W6HY22_LILLO | 0 | Chloroplast 1-deoxy-D-xylulose-5-phosphate reductoisomerase {ECO:0000313|EMBL:AHJ57307.1} |
| TAIR | AT5G62790 | 1.00E-176 | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000224 | 935391 | 946468 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008457
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|---|
| Module6 |
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF02670.15 | DXP_reductoisom | 75 | 137 | 4.00E-20 |
| PF08436.11 | DXP_redisom_C | 154 | 214 | 6.30E-24 |
| PF13288.5 | DXPR_C | 221 | 342 | 1.00E-36 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K00099 | dxr | Metabolic pathways | map01100 |
| Biosynthesis of secondary metabolites | map01110 | ||
| Biosynthesis of antibiotics | map01130 | ||
| Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0008299 | Biological Process | isoprenoid biosynthetic process |
| GO:0055114 | Biological Process | oxidation-reduction process |
| GO:0030604 | Molecular Function | 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity |
| GO:0046872 | Molecular Function | metal ion binding |
| GO:0070402 | Molecular Function | NADPH binding |
| GO:0005515 | Molecular Function | protein binding |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 15.480 |
| SRR2545915 | Juvenile tuber | 24.080 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 48.340 |
| SRR5643514 | five period of Gastrodia elata | 33.750 | |
| SRR5643515 | five period of Gastrodia elata | 32.140 | |
| SRR5643524 | five period of Gastrodia elata | 32.300 | |
| SRR5643525 | five period of Gastrodia elata | 12.180 | |
| SRR5643528 | five period of Gastrodia elata | 10.520 | |
| SRR5643658 | five period of Gastrodia elata | 12.160 | |
| SRR5643659 | five period of Gastrodia elata | 14.310 | |
| SRR5643660 | five period of Gastrodia elata | 10.360 | |
| SRR5643661 | five period of Gastrodia elata | 14.990 | |
| SRR5643662 | five period of Gastrodia elata | 12.280 | |
| SRR5643663 | five period of Gastrodia elata | 11.330 | |
| SRR5643664 | five period of Gastrodia elata | 10.840 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 100.230 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 121.720 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 113.620 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 151.900 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 168.570 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 156.330 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 146.880 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 202.830 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 77.490 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 69.070 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 65.870 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 65.870 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.17 |
| Juven | Juvenile tuber | 99.50 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 12.01 | |
| Mother_Juven | Mother tuber of Juvenile | 23.96 |