Detail information of GWHGAAEX008461/evm.TU.scaffold_219.36


Functional Annotation

DatabaseOrthologsE valueAnnotation
COGgi|189219334|ref|YP_001939975.1|2.00E-126formate dehydrogenase [Methylacidiphilum infernorum V4]
KOGKOG00690Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily)
nrgi|672128918|ref|XP_008787955.1|0PREDICTED: formate dehydrogenase, mitochondrial [Phoenix dactylifera]
Swissprottr|Q9SXP2|FDH1_ORYSJ0Formate dehydrogenase 1, mitochondrial (Precursor)
trEMBLtr|M0SAT8|M0SAT8_MUSAM0Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr3P01200_001}
TAIRAT5G147800formate dehydrogenase

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX00000224994019999201+
Transcript Sequence

Network for GWHGAAEX008461

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation
Module2

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00389.292-Hacid_dh994006.80E-17
PF02826.182-Hacid_dh_C1953734.60E-52
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00122FDH Metabolic pathways map01100
Microbial metabolism in diverse environmentsmap01120
Carbon metabolismmap01200
Glyoxylate and dicarboxylate metabolismmap00630
Methane metabolismmap00680

Gene Ontology

GO term OntologyName
GO:0055114Biological Processoxidation-reduction process
GO:0051287Molecular FunctionNAD binding
GO:0008863Molecular Functionformate dehydrogenase (NAD+) activity
GO:0016616Molecular Functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms115.710
SRR2545915Juvenile tuber207.310
SRP108465SRR5643513five period of Gastrodia elata296.310
SRR5643514five period of Gastrodia elata415.890
SRR5643515five period of Gastrodia elata254.190
SRR5643524five period of Gastrodia elata315.650
SRR5643525five period of Gastrodia elata119.920
SRR5643528five period of Gastrodia elata74.130
SRR5643658five period of Gastrodia elata126.590
SRR5643659five period of Gastrodia elata270.420
SRR5643660five period of Gastrodia elata231.380
SRR5643661five period of Gastrodia elata242.760
SRR5643662five period of Gastrodia elata156.660
SRR5643663five period of Gastrodia elata216.170
SRR5643664five period of Gastrodia elata184.070
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_1294.270
SRR6049655Rhizomagastrodiae_C368-T10_good_1252.690
SRR6049656Rhizomagastrodiae_C368-T07_good_1343.200
SRR6049657Rhizomagastrodiae_C368-T07_good_1201.360
SRR6049658Rhizomagastrodiae_C368-T04_good_1124.490
SRR6049659Rhizomagastrodiae_C368-T04_good_1101.620
SRR6049660Rhizomagastrodiae_C368-T01_good_1185.280
SRR6049661Rhizomagastrodiae_C368-T04_good_1139.050
SRR6049662Rhizomagastrodiae_C368-T01_good_1273.090
SRR6049663Rhizomagastrodiae_C368-T01_good_1207.580
SRR6049664Rhizomagastrodiae_C368-T10_good_1515.840
SRR6049665Rhizomagastrodiae_C368-T10_good_1515.840
SRP279888GastroGastrodia elata tuber 142.34
JuvenJuvenile tuber184.35
Mother_GastroMother tuber of Gastrodia elata 50.76
Mother_JuvenMother tuber of Juvenile 47.11