Detail information of GWHGAAEX008462/evm.TU.scaffold_219.38


Functional Annotation

DatabaseOrthologsE valueAnnotation
KOGKOG40325.00E-27Uncharacterized conserved protein
nrgi|743759476|ref|XP_010932466.1|2.90E-76PREDICTED: pre-rRNA-processing protein TSR2 [Elaeis guineensis]
trEMBLtr|W1NDG7|W1NDG7_AMBTC2.00E-55Uncharacterized protein {ECO:0000313|EMBL:ERM93497.1}
TAIRAT5G279905.00E-27Pre-rRNA-processing protein TSR2, conserved region

Location And Transcript Sequence

ScaffoldStartEndStrand
GWHAAEX0000022410134551026940+
Transcript Sequence

Network for GWHGAAEX008462

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist

Functional Module

Module IDFunction Annotation

Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF10273.8WGG271061.10E-24
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern

SRPSampleDescriptionFPKM
SRP064423SRR2545914vegetative propagation corms26.320
SRR2545915Juvenile tuber26.430
SRP108465SRR5643513five period of Gastrodia elata30.160
SRR5643514five period of Gastrodia elata30.970
SRR5643515five period of Gastrodia elata27.510
SRR5643524five period of Gastrodia elata34.260
SRR5643525five period of Gastrodia elata27.610
SRR5643528five period of Gastrodia elata32.540
SRR5643658five period of Gastrodia elata30.430
SRR5643659five period of Gastrodia elata28.830
SRR5643660five period of Gastrodia elata24.340
SRR5643661five period of Gastrodia elata26.330
SRR5643662five period of Gastrodia elata30.720
SRR5643663five period of Gastrodia elata26.390
SRR5643664five period of Gastrodia elata24.850
SRP118053SRR6049654Rhizomagastrodiae_C368-T07_good_119.300
SRR6049655Rhizomagastrodiae_C368-T10_good_133.470
SRR6049656Rhizomagastrodiae_C368-T07_good_124.670
SRR6049657Rhizomagastrodiae_C368-T07_good_117.170
SRR6049658Rhizomagastrodiae_C368-T04_good_121.240
SRR6049659Rhizomagastrodiae_C368-T04_good_120.200
SRR6049660Rhizomagastrodiae_C368-T01_good_121.190
SRR6049661Rhizomagastrodiae_C368-T04_good_117.620
SRR6049662Rhizomagastrodiae_C368-T01_good_129.830
SRR6049663Rhizomagastrodiae_C368-T01_good_124.820
SRR6049664Rhizomagastrodiae_C368-T10_good_134.210
SRR6049665Rhizomagastrodiae_C368-T10_good_134.210
SRP279888GastroGastrodia elata tuber 28.13
JuvenJuvenile tuber24.73
Mother_GastroMother tuber of Gastrodia elata 31.19
Mother_JuvenMother tuber of Juvenile 20.36