Gene detail

Detail information of GWHGAAEX008464/evm.TU.scaffold_219.40

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|256425395\|ref\|YP_003126048.1\|	6.00E-158	acetyl-CoA acetyltransferase [Chitinophaga pinensis DSM 2588]
KOG	KOG1390	0	Acetyl-CoA acetyltransferase
nr	gi\|743838664\|ref\|XP_010936771.1\|	0	PREDICTED: acetyl-CoA acetyltransferase, cytosolic 1-like [Elaeis guineensis]
Swissprot	tr\|Q9FIK7\|THIC2_ARATH	0	Probable acetyl-CoA acetyltransferase, cytosolic 2
trEMBL	tr\|M0S176\|M0S176_MUSAM	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GSMUA_Achr1P19180_001}
TAIR	AT5G47720	0	Thiolase family protein

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000224	1071914	1107762	+

Transcript Sequence
>GWHTAAEX008464 GAGCACTAAAAGCATATTAAATTCTACCACGAAAAGATAGTCCGAGCGTCGAGGAAATCTGGATAAGCTCACGGCTAATTCGCTACTCGCTCGTGCTTCACCTCCGTTCGTCCTCCTCAGAGTATAGCTTTAGAGGATCGTTGGCCAAACTCCGCCATTCCAACTCTATCGCATTCGGTGATCAAAGACTGTTCGATAATCGAACGGGTCCTTTAAACTAACGGTTTGGCAACTTATCCTATAATTCATGGCTTCAGCAACATTGCATGATGAATTGAAACCAAGAGATGTTTGCATTGTTGGTGTTGCTCGCACCCCCATTGGAGCCTTCCTTGGTTCCTTGTCATCTTTATCGGCTACGAAACTTGGGTCGATTGTCATTGAGAGTGCGTTAAGAAGGGCAAATGTTGATCCAACACTTGTACAGGAAGTTTATTTTGGTAATGTCCTGAGCGCAAACTTGGGACAAGCTCCTGCCAGGCAAGCTGCATTGGGTGCCGGAATACCAAACAAAGTTATATGCACAACCATTAACAAAGTTTGTTCTTCTGGAATGAAGGCAACAATGTTAGCAGCACAGAGTATTCAGCTGGGTATTAATGATATAGTTGTGTCTGGTGGTATGGAGAGCATGTCAAATGCTCCGAAGTATTTAGTAGATGCCAGAAAGGGTTCTCGATATGGCCATGATACAATTATTGATGGAATGCTTAAAGATGGTCTTTGGGATGTTTATAATGACTTTGCTATGGGAATGTGTGGTGAATTATGTGCTGATCAGTATTCAATAACAAGGGATGAGCAGGATGCACACGCAATTCAGAGTAATGAGCGAGGAATAGCTGCTACAAAAGGAGGTGCTTTTGCTTGGGAAATAACTCCGGTTGAAGTTTCGGCAGGTAGAGGAAGGCCTGTGGTCATTGTGGATAGAGATGAGAGCCTCGATAAATTTGATCCTATTAAACTAAAGAAACTCCGGTCTAGTTTTAAAGAGAATGGCGGAACTGTAACTGCAGGAAATGCATCTAGTATAAGTGATGGTGCTGCTGCCTTGGTTTTAGTCAGTGGAGCTAAGGTCCAAGAATTAGGATTGCATGTGATTGCAAAGATAAGAGGATATGCTGATGCTGCTCAGGCACCTGAACTTTTTACAACAACACCAACGCTTGCAATACCTAAAGCTATTTCAAATGCTGGATTGGAGGCATCCCAAATTGATTATTATGAAATAAATGAAGCATTTTCAGTTGTAGCCGTTGCTAATCAGAAACTTCTTGGGCTTCCTTCTGAAAATTTGAATGCTCATGGTGGAGCTGTATCGCTTGGTCACCCCCTCGGCTGCAGTGGAGCTCGCATTCTTGTCACATTATTAGGGGTTCTTCGACACAGAAATGGCAAATTTGGAGCTGCTGGCGTGTGCAATGGTGGCGGGGGAGCTTCCGCTCTTGTGCTGGAGCTCATGCCTCAAGCAGGAGCCAAGCTTTCGTTGTTATGAAATATTGAGCTCCAAATCTGGTTTGCAGTTTAGGGTTTAGGATTTTAAGATGCTGTGATTCATTTGTGTATGGTGTTTCTATTTTCTGCAATGGAAGACAAAGTGATGTTTTACAGTCTTTATAAAGTAGGGATAATGCCTATAACACACCATTATATTAAAATATTCAAAGCTACCATCCAATCATACGCTTCTCATTTGCAAGAGATGCCAAGTTTAATGGCAAATTCGATTGTAATTAAAAAAAGAGTTTGGTGGTGGTTTTGAATGTTTTAAGGTTAAGTGCTTAAATTTGTAAATAATGACTTGTGTGGTGTGCAGAAAACAAAATGTTAAGTAATTTCAAAAGGTGTGCTTAAAATTTTTATTGTTTGTTATATGAATCCCTTATCTTTATTGTGCATATTCAAATAGAAGCCCATTTGCAAGTTTCAACAGCACCAAGATTTAGTACTTTTTTTCATTGTTTGTTTCTTTTCATGTTTTTTTGGTCCTCCTTTAATATGGATTAAATTCATGCATTTAATTGTAGACATCGAATGTGAATAATTTAAGATGGTATTCTTTGATATCACTTGCTATTGAAGCCACCCTAACTTTGTTATTAGTAGACTTATTTCTCATTTTATTCGAAATTTTTGAGTGTACCCAATGTCTCTCCTTAGCATTCATAACATTTTTTTTCTTTGTTGGACAACATTTGCCCCATATAGCATGTGTTTTTCTATTTGTTCAGTTTTCATCTAACCAAATATGATCCTATTAATGATAATGCTCTATTTATATATAGCCAATGGTGTGAATGATTGAGCCAAGGTGTTTGAACTTCCCATTATTTTTTTTTATCACAAGAACTTCAAGAATTATGCTCTTAAAAC

Network for GWHGAAEX008464

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00108.22	Thiolase_N	15	273	2.80E-86
PF02803.17	Thiolase_C	283	403	4.00E-41

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00626	E2.3.1.9, atoB	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Biosynthesis of antibiotics	map01130
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Glyoxylate and dicarboxylate metabolism	map00630
		Propanoate metabolism	map00640
		Butanoate metabolism	map00650
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid degradation	map00071
		Synthesis and degradation of ketone bodies	map00072
		Cysteine and methionine metabolism	map00270
		Lysine degradation	map00310
		Tryptophan metabolism	map00380
		Terpenoid backbone biosynthesis	map00900
		Benzoate degradation	map00362
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0003824	Molecular Function	catalytic activity
GO:0016747	Molecular Function	transferase activity, transferring acyl groups other than amino-acyl groups

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	107.480
SRP064423	SRR2545915	Juvenile tuber	87.150
SRP108465	SRR5643513	five period of Gastrodia elata	90.570
	SRR5643514	five period of Gastrodia elata	91.550
	SRR5643515	five period of Gastrodia elata	83.280
	SRR5643524	five period of Gastrodia elata	85.520
	SRR5643525	five period of Gastrodia elata	91.980
	SRR5643528	five period of Gastrodia elata	89.240
	SRR5643658	five period of Gastrodia elata	90.560
	SRR5643659	five period of Gastrodia elata	69.750
	SRR5643660	five period of Gastrodia elata	76.170
	SRR5643661	five period of Gastrodia elata	72.600
	SRR5643662	five period of Gastrodia elata	91.160
	SRR5643663	five period of Gastrodia elata	89.940
	SRR5643664	five period of Gastrodia elata	88.880
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	112.880
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	109.020
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	108.640
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	134.920
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	119.400
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	140.620
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	117.480
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	122.080
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	100.910
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	90.640
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	99.450
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	99.450
SRP279888	Gastro	Gastrodia elata tuber	93.50
	Juven	Juvenile tuber	160.02
	Mother_Gastro	Mother tuber of Gastrodia elata	71.98
	Mother_Juven	Mother tuber of Juvenile	98.47