Detail information of GWHGAAEX008466/evm.TU.scaffold_2191.1
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|166368483|ref|YP_001660756.1| | 3.00E-66 | 50S ribosomal protein L4 [Microcystis aeruginosa NIES-843] |
| KOG | KOG1624 | 9.00E-89 | Mitochondrial/chloroplast ribosomal protein L4 |
| nr | gi|743882429|ref|XP_010909150.1| | 4.97E-110 | PREDICTED: 50S ribosomal protein L4, chloroplastic [Elaeis guineensis] |
| Swissprot | tr|O80361|RK4_TOBAC | 9.00E-101 | 50S ribosomal protein L4, chloroplastic (Precursor) |
| trEMBL | tr|K4ACZ1|K4ACZ1_SETIT | 7.00E-109 | Uncharacterized protein {ECO:0000313|EnsemblPlants:Si036748m} |
| TAIR | AT1G07320 | 9.00E-89 | ribosomal protein L4 |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00002183 | 48 | 1451 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008466
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF00573.21 | Ribosomal_L4 | 81 | 261 | 4.00E-53 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K02926 | RP-L4, MRPL4, rplD | Ribosome | map03010 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006412 | Biological Process | translation |
| GO:0003735 | Molecular Function | structural constituent of ribosome |
| GO:0005840 | Cellular Component | ribosome |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 5.020 |
| SRR2545915 | Juvenile tuber | 6.670 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 13.040 |
| SRR5643514 | five period of Gastrodia elata | 13.110 | |
| SRR5643515 | five period of Gastrodia elata | 14.860 | |
| SRR5643524 | five period of Gastrodia elata | 11.440 | |
| SRR5643525 | five period of Gastrodia elata | 18.290 | |
| SRR5643528 | five period of Gastrodia elata | 19.260 | |
| SRR5643658 | five period of Gastrodia elata | 20.500 | |
| SRR5643659 | five period of Gastrodia elata | 22.480 | |
| SRR5643660 | five period of Gastrodia elata | 21.580 | |
| SRR5643661 | five period of Gastrodia elata | 18.480 | |
| SRR5643662 | five period of Gastrodia elata | 22.690 | |
| SRR5643663 | five period of Gastrodia elata | 21.810 | |
| SRR5643664 | five period of Gastrodia elata | 23.120 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 11.950 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 22.420 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.680 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 8.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 8.480 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 7.590 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 10.860 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 9.620 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 12.970 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 10.970 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.680 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.680 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 16.36 |
| Juven | Juvenile tuber | 11.23 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 10.37 | |
| Mother_Juven | Mother tuber of Juvenile | 7.01 |