Gene detail

Detail information of GWHGAAEX008470/evm.TU.scaffold_22.8

Functional Annotation

Database	Orthologs	E value	Annotation
COG	gi\|42524005\|ref\|NP_969385.1\|	5.00E-179	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
KOG	KOG0054	0	Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily
nr	gi\|672161994\|ref\|XP_008800825.1\|	0	PREDICTED: ABC transporter C family member 14-like [Phoenix dactylifera]
Swissprot	tr\|Q7DM58\|AB4C_ARATH	0	ABC transporter C family member 4
trEMBL	tr\|V4U5T7\|V4U5T7_9ROSI	0	Uncharacterized protein {ECO:0000313\|EMBL:ESR57546.1}
TAIR	AT2G47800	0	multidrug resistance-associated protein 4

Location And Transcript Sequence

Scaffold	Start	End	Strand
GWHAAEX00000017	413238	448044	-

Transcript Sequence
>GWHTAAEX008470 ATGTCGGCGGGTCTGCGCTGCTCCCCGTTCGCGCTTCTTTCTCCGTGCTCCCAAGGCATCCTCATCTCCTCCCTCGATCTCGTCTTCCTCCTCTCCCTCCTCCTCTCCGCCCTCAAGAACATGCTCTCCGGCAATGATTCCATGCCGGAAGCCGCCAAACATCCTCTCCTCCGCGATCGTTCCCCTAGCGTCAGTACGACATGGCGCTCGAAGCTCTCCCTATCCATCTCCTCCGCCCTCAGCGCCTCCTTCCTTATCCTCCTGGTCCTCTCCATCCTCGAACCCTCCCGCAGCCCAATTCGACCCTTCGCCCTGTTTCTCCAATTCCTCTCTCACCTGGCATCAGCAGCCATCATCGCTATCAAGAAGCGCTTCCCCCTAACCCTTCGCCTTTTCTGGATCGCCTCCTTCCTTCTCTCCGCTCTAATCTCCGTCTCCGCCATTACTCGCCTCTCCTCCTCTCCTTCCGTAGCCATAGTCTCCATCGCCTTCCTCCTCTGCTCGGCCGCCCTTCTAGCCCTCTCAATCTGCCCCACCGCCGGCATTCCGTCATCAACAGAAACCCTAGGCTACAGCGCCGCCTCATTCCTCTCCCGCCTCACCTGGAACTGGATGAACCCTCTCCTAACTCAGGGCTACAAAACCCCTCTCAGAATCGAGGACATCCCCTCCCTCTCTCCTTCCCATCGCGCCGAGCGTCTCTCCAACCTCTTCGCATCAAAATGGCCGCCGAATCCCCCCAGATCCAGCCGTCCCGTGCTGAAAACCCTAATCCGATGCCTCTGGCGCGAACTCCTCCTCACAGCTTCACTCGCCTTCCTCCGCCTCTGCGTGATGTACGTCGGCCCCTCTCTCATCGCCCGATTTGTGAGCTCCTCGTCCGTCTCTGAGGGCTGCGCCCTCTGCCTGATCCTCCTCTCAGCCAAGCTCGTCGAAGTCCTCTGCTCCCATCAGTACAACTTCCACTCCCAGAAGACGGGCATGCTCATCCGCTCCGCCCTAACCACCGCCCTGTACCGAAAGGGCCTCCGCCTCTCCTGCTCTGCCCGGCAATCCCACGGCCTGGGAATGATCGTCAACTACATGGCCGTCGATGCCCAGCAGCTCTCGGACATGATGCTCCAGATCCACTACATCTGGCTCACGCCCCTTCAGGTCGCCCTCGCCCTCGCCCTCCTCTACATTTCCCTCGGCCCGGCCGTCGCCTCCGCAGTGGCCGGCATCGCCGCCATCATGATTTTCGTCTTGCTGGGCTCCAGCCGCAACAATCGCTTCCAGTTCTCCCTCATGGGAGCTCGGGACAAGCGGATGAGGGCCATCAACGAGATGCTGAGTTACATGCGCGTGATCAAGTTCCAGGCGTGGGAGGATCATTTCCAAAGCCGGATCCTTGGATTCCGATCCGAGGAGCTCGGATGGCTCTCTCGATTCATGTGGTCCGTCTCGGCCAACATCGTCGTGCTATGGAGCGCGCCGGCTATCCTCTCGTCGCTCGTCTTCGGCACCTGCGTCGCCGTCGGAGTCGGCCGCCTCGACGCCGGCGCGGTCTTCACGGCCACTTCTGTCTTCAGGGTGCTGCAGGAGCCCATGCGCAACTTTCCTCAGGCCCTGATTTCGGCCTCGCAGGCCATGGTTTCTCTCCAGCGATTGGATTCTTATATGGTCAGCGGGGAGCTGCAGGGGAATGCGGTGGAGCGGGTGGATGGATGCGAGGGGCCCGGTGCGCCTGCGGTGGAGGTTTGCCAAGGGGCTTTTGCGTGGGGGGACGAGGATTCTGCAACGGGCATTCAGGGCGTCAACATCCGGATCTACACCGGCGATCTTGTCGCCGTTGTCGGCACCGTTGGATCCGGCAAATCTTCCTTCCTTTCCTGCCTCCTCGGCGAGATGCGCCGCGTTTCTGGAAAGGTTAGGGTTTGTGGAAGAACGGCTTATGTGGCACAGACGGCATGGATACAGAATTGCACAATTCAGGAAAATATTTTGTTTGGTCTGCCCCTGATTCAGGAAAAGTACAATGAAGTGATCCGTGCATGCTGTTTGGAGAAGGATTTGGAGATGATGGAATTTGGAGATCAGACTGAGATTGGAGAGAGAGGAATCAACCTCAGCGGTGGTCAAAAACAGCGTATACAACTAGCGAGAGCCGTTTATCAGGATTCTGATATATACCTGCTTGATGATATATTCAGTGCTGTTGATGCTCACACCGGCTCAGAGATATTTAAGGAGTGCATAAGGGGTGTGCTGAAGGATAAGACAATTGTTCTTGTTACTCACCAAGTTGATTTCTTACACAATGTTGATCTCATTCTGGTTATGCGAGATGGTATCATTGTTCAATCCGGAAAGTATGACGAACTACTTGGCGCTGGTACTGATTTTGCATCTTTAGTTGCTGCACATGAAAGTTCCATGGAGCTTGTAGAGCATGGTGCACCCTCACACCAAAATATGGATAATTTATCTAAACTGTCCGATAAATCCATTACAAACGAAGAGAAATCTAACGGTGAAACTTCCACCATGTCTCCTAAGACTGAAAAAGGCTCTTCTAAACTCATTAAGGATGAGGAAAGGGAGACTGGTCAGGTCAGTTTGAATGTATACAAAGCCTACATCACGAAGGCTTGGGGTTGGTGGGGGGTCCTTGGTGTGTTGCTTGTTTCACTGCTGTGGCAAGGGTCTCTAATGGCGTGTGATTACTGGTTGTCATTTACAACGTCAGCAAACAATGCATCGTCATTTCGCTCTTCGCAATTTATTGGAGTATATGTGGGCATTGCTGTAGCTTCGGTTATCCTCATCACTGCAAGGTCCATTCTTCTCACATGCTGGGGGATACAGACGGCCCGGATCTTTTTTAAGCAGATATTGAACAGTATCTTGCAAGCACCCATGTCATTCTTCGATACCACACCTTCAGGAAGAATTCTTAGTCGAGTATCATCAGATCAAACCAACATTGATCTCTTCCTCCCTTTTTTTGTGGGATTGACGGTTTCAATGTACATTACAGTACTTAGCATTCTCATCGTTATCATCCAGGTCGCTTGGCCAACACTAATTTTCATAGTTCCATTAGGTTGGCTCAACATTTGGTACCGGGGTTATTATATTGCAACATCTCGAGAGATAACTCGTCTTGACTCGATAACCAAAGCACCTGTTATTCATCACTTCTCAGAGACCATCCAGGGTGTCATGACTATCCGGTGTTTCAAAAAAGAAGGAAAGTTTTCCCTGGAAAATATCAATAGAGTTAATGCAAACTTAACTATGGATTTTCACAACAATGGTGCTAATGAATGGATGGGATTCCGACTGGAATTAATTGGAATTTTTGTGTTATGCATGTCTGCTTTTCTCATGGTTATACTTCCCAGTTCAATTATAAACCCAGGATACGTTGGCTTATCTCTATCTTATGGTCTCTCCCTCAATAATGTGCTGTTTTTTGCCGTTTGGATGAGCTGCTTTCTGGAGAACAGAATGGTTTCTGTAGAAAGGATAAATCAATTCAGTGTAATTCCTCCAGAAGCTGTATGGAGGATTAAAGATTGCCTGCCTTCCCCAAACTGGCCCAGCCATGGAAATATTTTTCTCAGAAATTTAAAGGTTAGATATCGACCAAATACGCCCCTTGTTTTGAAAGGCATCACTCTTAACATCCATGGGGGTGAGAAGATTGGAATTGTTGGTCGGACGGGGAGTGGAAAATCGACTCTTATTCAAGCTCTTTTCAGAATTGTGGAACCTTCTGGAGGGAAGATAATCATTGATGGAGTGGACATTTGCATTTTAGGTCTCCATGATCTCAGGTCACGCTTTGGCATTATTCCTCAAGAGCCAGTTCTTTTTGATGGAACTGTGAGGAGCAATGTTGACCCAATAGGACAGTATACCGATGATGAAATATGGAAGAGCCTAGAAGGATGCCAGCTTAAGCAAGCTGTGTCTGCAAAACCTGAGAGGCTTGATTCTCTAGTGGTGGATAACGGAGAGAACTGGAGCGTTGGCCAGCGGCAGCTATTCTGTTTGGGCCGAGTTCTGCTGAAGAAAAGCCGAATTCTGTTCATGGATGAGGCCACTGCTTCCGTGGATTCGCACACCGACGGATTGATTCAGGCAATCATTCGCCAAGAATTTTCAAACTGCACTATCATCAGCATCGCCCATAGAATTCCCACTGTTATGGACTGCCACAGGGTGCTGGTTGTGGATTCAGGCCTAGCAAAGGAATTTGACTCGCCCGCTAACTTAATTGACCGCCCTTCCCTTTTCGGGGCACTGGTTCAGGAGTATGCTAATCGTTCTTCAGGTCTATGATTTTCTTAAGAAAATAATACTCTGAATAATGTAAGTTCTTGTCTTCCTAAATACACGAGTTTTGAGTAAATTAGAGGAAATGACTATTTTTGGGGGATTGTGGTCTGGAATCCTCTGAGGTTAAAGTTCAGAGTTCATTCGATGTAGCATATTTTGCCTTGTTACTAAGGTTTTTTTATTTTTGTTAGTATTATTAAACCTGACATCATTATTCAAATTTTCTTCTTTGCTAAGGCAGTGTTAATTCAAGCATATGCATCAGTATTGTTATATTAAGAGCCTCACACAACCTCCATCAGCATTGATTTTTGTAAGGAAAATTTCAACTGAAATGGGAATCACAAGTAAATGCCATATCAAATCTATTTATGCTATGTATACATAATGTGCAGTATATTTTAAATTACAATAAAAATAATTGGGTCTGAATCCTAAGTACTAGATATAACAAAATTTAAAATCTTGCAATATATTTTAATGCAAAATAAAGATCAGAGTGCAATAATATGAAACAAATAAAAATACATAATTGTCAAAT

Network for GWHGAAEX008470

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
Module4

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00664.22	ABC_membrane	269	530	1.20E-22
PF00005.26	ABC_tran	597	728	5.40E-17
PF00664.22	ABC_membrane	901	1136	1.80E-27
PF00005.26	ABC_tran	1217	1365	1.30E-27

Protein Sequence

>GWHPAAEX008470
MSAGLRCSPFALLSPCSQGILISSLDLVFLLSLLLSALKNMLSGNDSMPEAAKHPLLRDRSPSVSTTWRSKLSLSISSALSASFLILLVLSILEPSRSPIRPFALFLQFLSHLASAAIIAIKKRFPLTLRLFWIASFLLSALISVSAITRLSSSPSVAIVSIAFLLCSAALLALSICPTAGIPSSTETLGYSAASFLSRLTWNWMNPLLTQGYKTPLRIEDIPSLSPSHRAERLSNLFASKWPPNPPRSSRPVLKTLIRCLWRELLLTASLAFLRLCVMYVGPSLIARFVSSSSVSEGCALCLILLSAKLVEVLCSHQYNFHSQKTGMLIRSALTTALYRKGLRLSCSARQSHGLGMIVNYMAVDAQQLSDMMLQIHYIWLTPLQVALALALLYISLGPAVASAVAGIAAIMIFVLLGSSRNNRFQFSLMGARDKRMRAINEMLSYMRVIKFQAWEDHFQSRILGFRSEELGWLSRFMWSVSANIVVLWSAPAILSSLVFGTCVAVGVGRLDAGAVFTATSVFRVLQEPMRNFPQALISASQAMVSLQRLDSYMVSGELQGNAVERVDGCEGPGAPAVEVCQGAFAWGDEDSATGIQGVNIRIYTGDLVAVVGTVGSGKSSFLSCLLGEMRRVSGKVRVCGRTAYVAQTAWIQNCTIQENILFGLPLIQEKYNEVIRACCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQDSDIYLLDDIFSAVDAHTGSEIFKECIRGVLKDKTIVLVTHQVDFLHNVDLILVMRDGIIVQSGKYDELLGAGTDFASLVAAHESSMELVEHGAPSHQNMDNLSKLSDKSITNEEKSNGETSTMSPKTEKGSSKLIKDEERETGQVSLNVYKAYITKAWGWWGVLGVLLVSLLWQGSLMACDYWLSFTTSANNASSFRSSQFIGVYVGIAVASVILITARSILLTCWGIQTARIFFKQILNSILQAPMSFFDTTPSGRILSRVSSDQTNIDLFLPFFVGLTVSMYITVLSILIVIIQVAWPTLIFIVPLGWLNIWYRGYYIATSREITRLDSITKAPVIHHFSETIQGVMTIRCFKKEGKFSLENINRVNANLTMDFHNNGANEWMGFRLELIGIFVLCMSAFLMVILPSSIINPGYVGLSLSYGLSLNNVLFFAVWMSCFLENRMVSVERINQFSVIPPEAVWRIKDCLPSPNWPSHGNIFLRNLKVRYRPNTPLVLKGITLNIHGGEKIGIVGRTGSGKSTLIQALFRIVEPSGGKIIIDGVDICILGLHDLRSRFGIIPQEPVLFDGTVRSNVDPIGQYTDDEIWKSLEGCQLKQAVSAKPERLDSLVVDNGENWSVGQRQLFCLGRVLLKKSRILFMDEATASVDSHTDGLIQAIIRQEFSNCTIISIAHRIPTVMDCHRVLVVDSGLAKEFDSPANLIDRPSLFGALVQEYANRSSGL

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0055085	Biological Process	transmembrane transport
GO:0005524	Molecular Function	ATP binding
GO:0016887	Molecular Function	ATPase activity
GO:0042626	Molecular Function	ATPase activity, coupled to transmembrane movement of substances
GO:0016021	Cellular Component	integral component of membrane

Expression pattern

SRP	Sample	Description	FPKM
SRP064423	SRR2545914	vegetative propagation corms	33.460
SRP064423	SRR2545915	Juvenile tuber	57.220
SRP108465	SRR5643513	five period of Gastrodia elata	109.210
	SRR5643514	five period of Gastrodia elata	104.370
	SRR5643515	five period of Gastrodia elata	131.100
	SRR5643524	five period of Gastrodia elata	132.100
	SRR5643525	five period of Gastrodia elata	53.180
	SRR5643528	five period of Gastrodia elata	92.990
	SRR5643658	five period of Gastrodia elata	70.390
	SRR5643659	five period of Gastrodia elata	77.120
	SRR5643660	five period of Gastrodia elata	71.600
	SRR5643661	five period of Gastrodia elata	81.190
	SRR5643662	five period of Gastrodia elata	63.660
	SRR5643663	five period of Gastrodia elata	71.390
	SRR5643664	five period of Gastrodia elata	45.440
SRP118053	SRR6049654	Rhizomagastrodiae_C368-T07_good_1	32.120
	SRR6049655	Rhizomagastrodiae_C368-T10_good_1	33.780
	SRR6049656	Rhizomagastrodiae_C368-T07_good_1	31.000
	SRR6049657	Rhizomagastrodiae_C368-T07_good_1	36.420
	SRR6049658	Rhizomagastrodiae_C368-T04_good_1	29.080
	SRR6049659	Rhizomagastrodiae_C368-T04_good_1	37.820
	SRR6049660	Rhizomagastrodiae_C368-T01_good_1	31.290
	SRR6049661	Rhizomagastrodiae_C368-T04_good_1	34.840
	SRR6049662	Rhizomagastrodiae_C368-T01_good_1	41.150
	SRR6049663	Rhizomagastrodiae_C368-T01_good_1	42.390
	SRR6049664	Rhizomagastrodiae_C368-T10_good_1	30.940
	SRR6049665	Rhizomagastrodiae_C368-T10_good_1	30.940
SRP279888	Gastro	Gastrodia elata tuber	33.44
	Juven	Juvenile tuber	60.80
	Mother_Gastro	Mother tuber of Gastrodia elata	122.98
	Mother_Juven	Mother tuber of Juvenile	108.62