Detail information of GWHGAAEX008471/evm.TU.scaffold_22.12
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| KOG | KOG3293 | 2.00E-59 | Small nuclear ribonucleoprotein (snRNP) |
| nr | gi|694998267|ref|XP_009403678.1| | 1.70E-66 | PREDICTED: probable U6 snRNA-associated Sm-like protein LSm4 [Musa acuminata subsp. malaccensis] |
| Swissprot | tr|Q43582|LSM4_TOBAC | 4.00E-69 | Probable U6 snRNA-associated Sm-like protein LSm4 |
| trEMBL | tr|M0S5T8|M0S5T8_MUSAM | 4.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GSMUA_Achr2P06970_001} |
| TAIR | AT5G27720 | 2.00E-59 | Small nuclear ribonucleoprotein family protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000017 | 580483 | 601846 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008471
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF01423.21 | LSM | 6 | 70 | 1.10E-16 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K12623 | LSM4 | Spliceosome | map03040 |
| RNA degradation | map03018 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0000398 | Biological Process | mRNA splicing, via spliceosome |
| GO:0000956 | Biological Process | nuclear-transcribed mRNA catabolic process |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 52.600 |
| SRR2545915 | Juvenile tuber | 50.730 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 44.870 |
| SRR5643514 | five period of Gastrodia elata | 52.890 | |
| SRR5643515 | five period of Gastrodia elata | 44.690 | |
| SRR5643524 | five period of Gastrodia elata | 48.440 | |
| SRR5643525 | five period of Gastrodia elata | 45.570 | |
| SRR5643528 | five period of Gastrodia elata | 63.810 | |
| SRR5643658 | five period of Gastrodia elata | 42.180 | |
| SRR5643659 | five period of Gastrodia elata | 45.350 | |
| SRR5643660 | five period of Gastrodia elata | 41.280 | |
| SRR5643661 | five period of Gastrodia elata | 46.930 | |
| SRR5643662 | five period of Gastrodia elata | 51.130 | |
| SRR5643663 | five period of Gastrodia elata | 49.360 | |
| SRR5643664 | five period of Gastrodia elata | 43.980 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 42.870 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 29.580 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 39.830 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 37.120 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 51.150 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 49.620 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 46.060 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 44.820 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 50.830 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 55.530 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 48.080 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 48.080 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 63.16 |
| Juven | Juvenile tuber | 55.77 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 63.48 | |
| Mother_Juven | Mother tuber of Juvenile | 80.24 |