Detail information of GWHGAAEX008472/evm.TU.scaffold_22.18
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| COG | gi|14521544|ref|NP_127020.1| | 3.00E-36 | DNA repair helicase rad3 [Pyrococcus abyssi GE5] |
| KOG | KOG1131 | 0 | RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 |
| nr | gi|672170007|ref|XP_008805052.1| | 0 | PREDICTED: LOW QUALITY PROTEIN: DNA repair helicase UVH6 [Phoenix dactylifera] |
| Swissprot | tr|Q8W4M7|ERCC2_ARATH | 0 | DNA repair helicase UVH6 |
| trEMBL | tr|F6HQ82|F6HQ82_VITVI | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:CCB56839.1} |
| TAIR | AT1G03190 | 0 | RAD3-like DNA-binding helicase protein |
Location And Transcript Sequence
| Scaffold | Start | End | Strand |
|---|---|---|---|
| GWHAAEX00000017 | 1003797 | 1055671 | - |
 | |||
| Transcript Sequence | |||
Network for GWHGAAEX008472
| Network category | Network | Top300 PCC genelist |
|---|---|---|
| Coexpression Positive | Network | Top300 PCC genelist |
| Coexpression Negative | Network | Top300 PCC genelist |
Functional Module
| Module ID | Function Annotation |
|---|
Protein Structure
| Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|
| PF06733.14 | DEAD_2 | 72 | 265 | 1.60E-50 |
| PF06777.10 | HBB | 279 | 421 | 7.70E-28 |
| PF13307.5 | Helicase_C_2 | 533 | 706 | 6.10E-40 |
 | ||||
| Protein Sequence | ||||
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | pathway | mapID |
|---|---|---|---|
| K10844 | ERCC2, XPD | Basal transcription factors | map03022 |
| Nucleotide excision repair | map03420 |
Gene Ontology
| GO term | Ontology | Name |
|---|---|---|
| GO:0006139 | Biological Process | nucleobase-containing compound metabolic process |
| GO:0006289 | Biological Process | nucleotide-excision repair |
| GO:0003678 | Molecular Function | DNA helicase activity |
| GO:0016818 | Molecular Function | hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0004386 | Molecular Function | helicase activity |
| GO:0005524 | Molecular Function | ATP binding |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0005634 | Cellular Component | nucleus |
Expression pattern
| SRP | Sample | Description | FPKM |
|---|---|---|---|
| SRP064423 | SRR2545914 | vegetative propagation corms | 8.900 |
| SRR2545915 | Juvenile tuber | 9.810 | |
| SRP108465 | SRR5643513 | five period of Gastrodia elata | 10.690 |
| SRR5643514 | five period of Gastrodia elata | 11.590 | |
| SRR5643515 | five period of Gastrodia elata | 10.820 | |
| SRR5643524 | five period of Gastrodia elata | 11.510 | |
| SRR5643525 | five period of Gastrodia elata | 12.140 | |
| SRR5643528 | five period of Gastrodia elata | 11.360 | |
| SRR5643658 | five period of Gastrodia elata | 11.090 | |
| SRR5643659 | five period of Gastrodia elata | 15.870 | |
| SRR5643660 | five period of Gastrodia elata | 15.950 | |
| SRR5643661 | five period of Gastrodia elata | 15.640 | |
| SRR5643662 | five period of Gastrodia elata | 17.490 | |
| SRR5643663 | five period of Gastrodia elata | 14.950 | |
| SRR5643664 | five period of Gastrodia elata | 14.260 | |
| SRP118053 | SRR6049654 | Rhizomagastrodiae_C368-T07_good_1 | 12.090 |
| SRR6049655 | Rhizomagastrodiae_C368-T10_good_1 | 9.660 | |
| SRR6049656 | Rhizomagastrodiae_C368-T07_good_1 | 12.750 | |
| SRR6049657 | Rhizomagastrodiae_C368-T07_good_1 | 10.840 | |
| SRR6049658 | Rhizomagastrodiae_C368-T04_good_1 | 11.600 | |
| SRR6049659 | Rhizomagastrodiae_C368-T04_good_1 | 9.830 | |
| SRR6049660 | Rhizomagastrodiae_C368-T01_good_1 | 12.310 | |
| SRR6049661 | Rhizomagastrodiae_C368-T04_good_1 | 12.640 | |
| SRR6049662 | Rhizomagastrodiae_C368-T01_good_1 | 16.070 | |
| SRR6049663 | Rhizomagastrodiae_C368-T01_good_1 | 14.130 | |
| SRR6049664 | Rhizomagastrodiae_C368-T10_good_1 | 14.340 | |
| SRR6049665 | Rhizomagastrodiae_C368-T10_good_1 | 14.340 | |
| SRP279888 | Gastro | Gastrodia elata tuber | 12.93 |
| Juven | Juvenile tuber | 8.76 | |
| Mother_Gastro | Mother tuber of Gastrodia elata | 7.56 | |
| Mother_Juven | Mother tuber of Juvenile | 5.01 |